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biology/trimmomatic Flexible read trimming tool for Illumina NGS data
biology/plinkseq C/C++ library for working with human genetic variation data
biology/bwa Map low-divergent sequences against a large reference genome
devel/py-xopen Open compressed files transparently
biology/cdhit Clustering and comparing protein or nucleotide sequences
biology/plink Whole-genome association analysis toolset
devel/libctl Guile-based flexible control file library for scientific simulations
biology/hisat2 Alignment program for mapping next-generation sequencing reads
textproc/man2html Convert nroff(1) man pages to HTML
parallel/ganglia-monitor-core Ganglia cluster monitor, monitoring daemon
biology/htslib C library for high-throughput sequencing data formats
math/arpack Library of subroutines to solve eigenvalue problems
archivers/libaec Adaptive entropy coding library
biology/fastp Ultra-fast all-in-one FASTQ preprocessor
devel/swig2 Simplified Wrapper and Interface Generator (version 2)
parallel/slurm-wlm Simple Linux Utility for Resource Management
biology/ncbi-blast+ NCBI implementation of Basic Local Alignment Search Tool
biology/kallisto Quantify abundances of transcripts from RNA-Seq data
biology/samtools Tools for manipulating next-generation sequencing data
biology/stacks Software pipeline for building loci from short-read sequences
biology/bcftools Calling and manipulating files VCF and BCF formats
security/munge Authentication service for creating and validating credentials
biology/canu Single molecule sequence assembler for genomes large and small
biology/vsearch Versatile open-source tool for metagenomics