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Category listing - biology((V)irtual = Package is only listed here)
| arka | | Graphic interface for the programs from the GP package |
| azara | | Programs to process and view NMR data |
| bioperl | | Perl tools for computational molecular biology |
| bioruby (V) | | Intergrated environment for Bioinformatics using Ruby |
| chemtool | | Program for drawing organic molecules |
| clustalw | | General purpose multiple alignment program for DNA or proteins |
| coalesce | | Estimates effective population size and mutation rate |
| fastDNAml | | Program derived from Joseph Felsenstein's version 3.3 DNAML |
| fluctuate | | Estimation of population growth rate |
| genesplicer | | Computational Method for Splice Site Prediction |
| glimmer | | System for finding genes in microbial DNA |
| gp | | Manipulate DNA/RNA sequence in a Unix fashion |
| hmmer | | Implementation of profile HMM software for protein sequence analysis |
| lucy | | Sequence Cleanup Program |
| mopac | | Molecular energy calculation program |
| mummer | | System for aligning whole genome sequences |
| nut | | Record what you eat and analyze your meals |
| pdbalign | | Prediction of Protein Secondary Structure and Active Sites |
| phylip | | Phylogeny Inference Package |
| profit | | Performs least squares fits of two protein structures |
| puzzle | | Maximum likelihood analysis of molecular sequence data |
| py-mol | | Molecular Visualization System |
| py-pygr (V) | | Pygr graph database for bioinformatics |
| rasmol | | Molecular Graphics Visualisation Tool |
| sewer | | SEquence Analysis using WEb Resources |
| stride | | Protein secondary structure assignment from atomic coordinates |
| xylem | | Tools for manipulation of genetic databases |