./biology/canu, Single molecule sequence assembler for genomes large and small

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Branch: CURRENT, Version: 1.8, Package name: canu-1.8, Maintainer: bacon

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule
sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

Detect overlaps in high-noise sequences using MHAP

Generate corrected sequence consensus

Trim corrected sequences

Assemble trimmed corrected sequences


Required to run:
[graphics/gnuplot] [lang/perl5] [devel/boost-libs]

Required to build:
[devel/boost-headers] [pkgtools/cwrappers]

Master sites:

SHA1: 7dd79415aa5ecb95f05109f0d8d58f7cbfc336e9
RMD160: 78d4872b4034f526037ce225c699debd910bd586
Filesize: 2407.533 KB

Version history: (Expand)


CVS history: (Expand)


   2019-01-07 03:33:17 by Jason Bacon | Files touched by this commit (8)
Log message:
biology/canu: import canu-1.8

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule
sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

    Detect overlaps in high-noise sequences using MHAP

    Generate corrected sequence consensus

    Trim corrected sequences

    Assemble trimmed corrected sequences