./biology/hmmer, Implementation of profile HMM software for protein sequence analysis

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Branch: CURRENT, Version: 3.0, Package name: hmmer-3.0, Maintainer: hdp

HMMER is an implementation of profile HMM methods for sensitive database
searches using multiple sequence alignments as queries. HMMER takes
multiple sequence alignment as input and builds statistical model
called "Hidden Markov Model" which can be used as a query into a
sequence database to find and/or align additional homologues of the
sequence family.


Required to build:
[pkgtools/cwrappers]

Master sites: (Expand)

SHA1: 77803c0bdb3ab07b7051a4c68c0564de31940c6d
RMD160: 681967fd0d2c0104ca9e080688d9652a187a8b45
Filesize: 3859.39 KB

Version history: (Expand)


CVS history: (Expand)


   2017-01-19 19:52:30 by Alistair G. Crooks | Files touched by this commit (352)
Log message:
Convert all occurrences (353 by my count) of

	MASTER_SITES= 	site1 \
			site2

style continuation lines to be simple repeated

	MASTER_SITES+= site1
	MASTER_SITES+= site2

lines. As previewed on tech-pkg. With thanks to rillig for fixing pkglint
accordingly.
   2015-11-02 19:42:23 by Alistair G. Crooks | Files touched by this commit (38)
Log message:
Add SHA512 digests for distfiles for biology category.

Existing SHA1 digests verified, all found to be the same on the
machine holding the existing distfiles (morden).  Existing SHA1
digests retained for now as an audit trail.
   2014-10-09 16:07:17 by Thomas Klausner | Files touched by this commit (1163)
Log message:
Remove pkgviews: don't set PKG_INSTALLATION_TYPES in Makefiles.
   2013-07-21 17:58:51 by Wen Heping | Files touched by this commit (4) | Package updated
Log message:
Update to 3.0
Add LICENSE
Add more distfile mirrors

Upstream changelog please visit:
http://selab.janelia.org/software/hmmer … EASE-NOTES
   2012-09-11 22:32:15 by Aleksej Saushev | Files touched by this commit (31)
Log message:
"user-destdir" is default these days
   2009-07-16 16:53:19 by Joerg Sonnenberger | Files touched by this commit (1)
Log message:
Fix patch-aa sum.
   2009-07-08 17:20:04 by Joerg Sonnenberger | Files touched by this commit (2)
Log message:
user-destdir support
   2009-05-17 01:28:13 by Zafer Aydogan | Files touched by this commit (1)
Log message:
fetch from gentoo mirror.