./biology/mummer, System for aligning whole genome sequences

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Branch: CURRENT, Version: 3.20nb5, Package name: mummer-3.20nb5, Maintainer: hdp

Mummer is a system for aligning whole genome sequences. Using an efficient
data structure called a suffix tree, the system is able rapidly to align
sequences containing millions of nucleotides whether in complete or draft
form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s
of contigs from a shotgun sequencing project with ease, and will align them to
another set of contigs or a genome using the NUCmer program included with the
system.


Required to run:
[lang/perl5]

Master sites:

SHA1: 68d6742de93d8524236ccf538f32ba8bb4edf7cc
RMD160: 7e5fefef359c6a6ee49f2ebf14dc18caa19f48fb
Filesize: 3081.49 KB

Version history: (Expand)


CVS history: (Expand)


   2016-07-09 08:39:18 by Thomas Klausner | Files touched by this commit (1068) | Package updated
Log message:
Bump PKGREVISION for perl-5.24.0 for everything mentioning perl.
   2015-11-02 19:42:23 by Alistair G. Crooks | Files touched by this commit (38)
Log message:
Add SHA512 digests for distfiles for biology category.

Existing SHA1 digests verified, all found to be the same on the
machine holding the existing distfiles (morden).  Existing SHA1
digests retained for now as an audit trail.
   2015-06-12 12:52:19 by Thomas Klausner | Files touched by this commit (3152)
Log message:
Recursive PKGREVISION bump for all packages mentioning 'perl',
having a PKGNAME of p5-*, or depending such a package,
for perl-5.22.0.
   2014-05-30 01:38:20 by Thomas Klausner | Files touched by this commit (3049)
Log message:
Bump for perl-5.20.0.
Do it for all packages that
* mention perl, or
* have a directory name starting with p5-*, or
* depend on a package starting with p5-
like last time, for 5.18, where this didn't lead to complaints.
Let me know if you have any this time.
   2013-05-31 14:42:58 by Thomas Klausner | Files touched by this commit (2880)
Log message:
Bump all packages for perl-5.18, that
a) refer 'perl' in their Makefile, or
b) have a directory name of p5-*, or
c) have any dependency on any p5-* package

Like last time, where this caused no complaints.
   2012-10-03 23:59:10 by Thomas Klausner | Files touched by this commit (2798)
Log message:
Bump all packages that use perl, or depend on a p5-* package, or
are called p5-*.

I hope that's all of them.
   2012-09-11 22:32:15 by Aleksej Saushev | Files touched by this commit (31)
Log message:
"user-destdir" is default these days
   2011-11-25 21:09:01 by Joerg Sonnenberger | Files touched by this commit (2)
Log message:
Remove concurrently created patch.