./biology/ncbi-blast+, NCBI implementation of Basic Local Alignment Search Tool

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Branch: CURRENT, Version: 2.8.1, Package name: ncbi-blast+-2.8.1, Maintainer: bacon

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity
between sequences. The program compares nucleotide or protein sequences to
sequence databases and calculates the statistical significance of matches.
BLAST can be used to infer functional and evolutionary relationships between
sequences as well as help identify members of gene families.


Required to run:
[archivers/lzo] [security/libgpg-error] [security/gnutls] [security/libtasn1] [security/libgcrypt] [devel/gmp] [devel/pcre] [lang/python27] [security/nettle] [security/p11-kit] [databases/lmdb] [devel/libidn2]

Required to build:
[pkgtools/cwrappers]

Master sites: (Expand)

SHA1: 16573b642d7861d0bed67f3eb1174fc646819eec
RMD160: ef8df6c4b3cae18b2ab4509af15554ee8d8f9bfd
Filesize: 24388.236 KB

Version history: (Expand)


CVS history: (Expand)


   2019-01-07 16:00:11 by Jason Bacon | Files touched by this commit (6)
Log message:
ncbi-blast+: Upgrade to 2.8.1

Support for new BLAST database format
Increased makeblastdb output file size limit to 4GB
Other minor bug fixes and enhancements

OK wiz@
   2018-12-09 19:52:52 by Adam Ciarcinski | Files touched by this commit (724)
Log message:
revbump after updating textproc/icu
   2018-07-20 05:34:33 by Ryo ONODERA | Files touched by this commit (705)
Log message:
Recursive revbump from textproc/icu-62.1
   2018-07-04 15:40:45 by Jonathan Perkin | Files touched by this commit (423)
Log message:
*: Move SUBST_STAGE from post-patch to pre-configure

Performing substitutions during post-patch breaks tools such as mkpatches,
making it very difficult to regenerate correct patches after making changes,
and often leading to substituted string replacements being committed.
   2018-05-22 23:37:29 by Jason Bacon | Files touched by this commit (3)
Log message:
biology/ncbi-blast+: Respect env to support PKGSRC_USE_RELRO

Fix a previous patch that hard-coded relro support by patching in pkgsrc
CFLAGS, CXXFLAGS, and LDFLAGS instead.

OK wiz@
   2018-04-29 23:00:04 by Adam Ciarcinski | Files touched by this commit (1)
Log message:
ncbi-blast+: removed references to wip
   2018-04-27 22:28:28 by Jason Bacon | Files touched by this commit (11)
Log message:
biology/ncbi-blast+: import ncbi-blast+-2.7.1

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity
between sequences. The program compares nucleotide or protein sequences to
sequence databases and calculates the statistical significance of matches.
BLAST can be used to infer functional and evolutionary relationships between
sequences as well as help identify members of gene families.

OK wiz@