./biology/plink, Whole-genome association analysis toolset

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Branch: CURRENT, Version: 1.07, Package name: plink-1.07, Maintainer: jwbacon

PLINK is a free, open-source whole genome association analysis
toolset, designed to perform a range of basic, large-scale
analyses in a computationally efficient manner.

The focus of PLINK is purely on analysis of genotype/phenotype
data, so there is no support for steps prior to this (e.g. study
design and planning, generating genotype or CNV calls from raw
data). Through integration with gPLINK and Haploview, there is
some support for the subsequent visualization, annotation and
storage of results.


Required to run:
[lang/g95] [math/lapack] [math/blas] [devel/libf2c]

Master sites:

SHA1: d41a2d014ebc02bf11e5235292b50fad6dedd407
RMD160: ce22e2388fc711ac9938d21ffd3cb68512ba1150
Filesize: 2204.392 KB

Version history: (Expand)


CVS history: (Expand)


   2016-02-25 12:21:12 by Jonathan Perkin | Files touched by this commit (1)
Log message:
Use OPSYSVARS.
   2015-12-29 05:54:40 by David A. Holland | Files touched by this commit (61)
Log message:
Whitespace.
   2015-11-02 19:42:23 by Alistair G. Crooks | Files touched by this commit (38)
Log message:
Add SHA512 digests for distfiles for biology category.

Existing SHA1 digests verified, all found to be the same on the
machine holding the existing distfiles (morden).  Existing SHA1
digests retained for now as an audit trail.
   2013-12-10 15:20:49 by Jonathan Perkin | Files touched by this commit (1)
Log message:
Add socket libraries on SunOS.  Patch from Sebastian Wiedenroth.
   2012-11-16 01:32:07 by Joerg Sonnenberger | Files touched by this commit (4)
Log message:
Don't redefine local variables.
   2012-09-14 19:56:15 by Aleksej Saushev | Files touched by this commit (1)
Log message:
Fix PKGNAME.
   2012-09-14 19:48:22 by Aleksej Saushev | Files touched by this commit (1)
Log message:
Remove errorneously imported backup file. (Why was it not ignored??)
   2012-09-14 19:46:23 by Aleksej Saushev | Files touched by this commit (6) | Imported package
Log message:
Import PLINK 1.07 as biology/plink
From Jason Bacon via pkgsrc-wip.