./biology/plinkseq, C/C++ library for working with human genetic variation data

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Branch: CURRENT, Version: 0.08nb1, Package name: plinkseq-0.08nb1, Maintainer: jwbacon

PLINK/SEQ is an open-source C/C++ library for working with human genetic
variation data. The specific focus is to provide a platform for analytic tool
development for variation data from large-scale resequencing and genotyping
projects, particularly whole-exome and whole-genome studies. It is independent
of (but designed to be complementary to) the existing PLINK package.


Required to run:
[shells/bash] [devel/protobuf]

Required to build:
[pkgtools/cwrappers]

Master sites:

SHA1: 8bff6b32750eee85559dda2c7c3cf9aea423a3d7
RMD160: bce0966ea5f25d8c1091157561aaf533a98595ec
Filesize: 2921.749 KB

Version history: (Expand)


CVS history: (Expand)


   2016-12-17 13:55:29 by Roland Illig | Files touched by this commit (3)
Log message:
Fixed pkglint warnings.
   2015-11-02 19:42:23 by Alistair G. Crooks | Files touched by this commit (38)
Log message:
Add SHA512 digests for distfiles for biology category.

Existing SHA1 digests verified, all found to be the same on the
machine holding the existing distfiles (morden).  Existing SHA1
digests retained for now as an audit trail.
   2014-04-17 23:23:19 by Aleksej Saushev | Files touched by this commit (2)
Log message:
__BSD_VISIBLE is needed on FreeBSD for PF_INET.
   2014-02-08 13:27:14 by Sebastian Wiedenroth | Files touched by this commit (7)
Log message:
fix build on SunOS
   2013-03-26 21:11:19 by Aleksej Saushev | Files touched by this commit (3) | Package updated
Log message:
Fix build against newer protocol buffers library.

Regenerate source from missing protocol description fetched from:
https://bitbucket.org/statgen/plinkseq/ … iant.proto
https://bitbucket.org/statgen/plinkseq/ … b/pp.proto

Bump PKGREVISION.
   2012-11-01 05:06:21 by Aleksej Saushev | Files touched by this commit (4)
Log message:
Import PLINK/SEQ version 0.08 as biology/plinkseq
Packaged by Jason Bacon for pkgsrc-wip.

PLINK/SEQ is an open-source C/C++ library for working with human genetic
variation data. The specific focus is to provide a platform for analytic tool
development for variation data from large-scale resequencing and genotyping
projects, particularly whole-exome and whole-genome studies. It is independent
of (but designed to be complementary to) the existing PLINK package.