./math/R, Statistical language for data analysis and graphics

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Branch: CURRENT, Version: 3.6.1nb1, Package name: R-3.6.1nb1, Maintainer: pkgsrc-users

R is a language which bears a passing resemblance to the S language
developed at AT&T Bell Laboratories. It provides support for a
variety of statistical and graphical analyses. R is a true
computer language which contains a number of control-flow
constructions for iteration and alternation. It allows users to
add additional functionality by defining new functions. On
platforms which support the dlopen (3) interface, Fortran and C
code can be linked and called at run time.

R is very close to S in both syntax and semantics, but is not identical.
Whether this is a bug or feature is an open question.

Required to run:
[converters/libiconv] [www/curl] [graphics/tiff] [graphics/png] [graphics/cairo] [graphics/jpeg] [lang/perl5] [lang/g95] [math/lapack] [math/blas] [devel/glib2] [devel/pango] [devel/gettext-lib] [devel/pcre] [devel/readline] [x11/tk]

Required to build:
[pkgtools/x11-links] [x11/xcb-proto] [devel/libtool-fortran] [pkgtools/cwrappers] [x11/xorgproto]

Master sites: (Expand)

SHA1: 0041c025561b5622e3dc88cdedf82334620cd3c2
RMD160: 0944f67117372acf342251c988d83b83839deccf
Filesize: 29749.044 KB

Version history: (Expand)

CVS history: (Expand)

   2019-11-02 17:16:23 by Roland Illig | Files touched by this commit (47)
Log message:
math: align variable assignments

pkglint -Wall -F --only aligned -r

Manual correction in R/Makefile.extension for the MASTER_SITES
continuation line.
   2019-10-20 05:29:10 by Mark Davies | Files touched by this commit (1)
Log message:
R: drop maintainership
   2019-10-13 14:21:23 by Roland Illig | Files touched by this commit (1)
Log message:
math/R: add test code for R packages
   2019-10-06 23:45:14 by Roland Illig | Files touched by this commit (1)
Log message:
math/R: remove unknown configure arguments
   2019-08-22 14:23:56 by Ryo ONODERA | Files touched by this commit (678)
Log message:
Recursive revbump from boost-1.71.0
   2019-08-14 16:36:59 by Wen Heping | Files touched by this commit (2) | Package updated
Log message:
Update to 3.6.1

Upstream changes:


    * The default detection of the shell variable libNN is overridden
      for derivatives of Debian Linux, some of which have started to
      have a /usr/lib64 directory.  (E.g. Ubuntu 19.04.)  As before, it
      can be specified in config.site.


    * R CMD config knows the values of AR and RANLIB, often set for LTO


    * The use of a character vector with .Fortran() is formally
      deprecated and gives a non-portability warning.  (It has long
      been strongly discouraged in 'Writing R Extensions'.)


    * On Windows, GUI package installation via menuInstallPkgs() works
      again, thanks to Len Weil's and Duncan Murdoch's PR#17556.

    * R CMD check on data() fixing PR#17558 thanks to Duncan Murdoch.

    * quasi(*, variance = list(..)) now works more efficiently, and
      should work in all cases fixing PR#17560.  Further, quasi(var =
      mu(1-mu)) and quasi(var = "mu ^ 3") now work, and quasi(variance
      = "log(mu)") now gives a correct error message.

    * Creation of lazy loading database during package installation is
      again robust to Rprofile changing the current working directory

    * boxplot(y ~ f, horizontal=TRUE) now produces correct x- and

    * rbind.data.frame() allows to keep <NA> levels from factor columns
      (PR#17562) via new option factor.exclude.

      Additionally, it works in one more case with matrix-columns which
      had been reported on 2017-01-16 by Krzysztof Banas.

    * Correct messaging in C++ pragma checks in tools code for R CMD
      check, fixing PR#17566 thanks to Xavier Robin.

    * print()ing and auto-printing no longer differs for functions with
      a user defined print.function, thanks to Bill Dunlap's report.

    * On Windows, writeClipboard(.., format = <n>) now does correctly
      pass format to the underlying C code, thanks to a bug report
      (with patch) by Jenny Bryan.

    * as.data.frame() treats 1D arrays the same as vectors, PR#17570.

    * Improvements in smoothEnds(x, *) working with NAs (towards
      runmed() working in that case, in the next version of R).

    * vcov(glm(<quasi>), dispersion = *) works correctly again, fixing
      PR#17571 thanks to Pavel Krivitsky.

    * R CMD INSTALL of binary packages on Windows now works also with
      per-directory locking.

    * R CMD INSTALL and install.packages() on Windows are now more
      robust against a locked file in an earlier installation of the
      package to be installed.  The default value of option
      install.lock on Windows has been changed to TRUE.

    * On Unix alikes (when readline is active), only expand tilde (~)
      file names starting with a tilde, instead of almost all tildes.

    * In R documentation (*.Rd) files, \item [..] is no longer treated
      specially when rendered in LaTeX and hence pdf, but rather shows
      the brackets in all cases.
   2019-08-11 15:25:21 by Thomas Klausner | Files touched by this commit (3557) | Package updated
Log message:
Bump PKGREVISIONs for perl 5.30.0
   2019-08-07 23:54:34 by Brook Milligan | Files touched by this commit (1)
Log message:
Add 'R' to the cateogries for R packages.

The category 'R' is used to denote R packages, just as 'perl5' and 'python'
are used in other cases.  To ensure consistency, add that to CATEGORIES in
Makefile.extension rather than in each individual R package.  This was
discussed in http://mail-index.netbsd.org/tech-pkg/2 … 1711.html.