./math/R, Statistical language for data analysis and graphics

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Branch: CURRENT, Version: 3.4.3nb1, Package name: R-3.4.3nb1, Maintainer: markd

R is a language which bears a passing resemblance to the S language
developed at AT&T Bell Laboratories. It provides support for a
variety of statistical and graphical analyses. R is a true
computer language which contains a number of control-flow
constructions for iteration and alternation. It allows users to
add additional functionality by defining new functions. On
platforms which support the dlopen (3) interface, Fortran and C
code can be linked and called at run time.

R is very close to S in both syntax and semantics, but is not identical.
Whether this is a bug or feature is an open question.


Required to run:
[converters/libiconv] [www/curl] [graphics/tiff] [graphics/png] [graphics/cairo] [graphics/jpeg] [lang/perl5] [lang/g95] [math/lapack] [math/blas] [devel/glib2] [devel/pango] [devel/gettext-lib] [devel/pcre] [devel/readline] [x11/tk]

Required to build:
[pkgtools/x11-links] [x11/glproto] [x11/renderproto] [x11/xproto] [x11/xf86vidmodeproto] [x11/xf86driproto] [x11/damageproto] [x11/inputproto] [x11/xextproto] [x11/dri2proto] [x11/xcb-proto] [x11/fixesproto4] [devel/libtool-fortran] [pkgtools/cwrappers]

Master sites: (Expand)

SHA1: 537d481888f20d385b3039f2f2b0c49b7b0fb5de
RMD160: e7c7f17f8c39a8ea7ce253e32d248e9779b62227
Filesize: 29540.679 KB

Version history: (Expand)


CVS history: (Expand)


   2018-01-07 14:04:44 by Roland Illig | Files touched by this commit (583)
Log message:
Fix indentation in buildlink3.mk files.

The actual fix as been done by "pkglint -F */*/buildlink3.mk", and was
reviewed manually.

There are some .include lines that still are indented with zero spaces
although the surrounding .if is indented. This is existing practice.
   2018-01-01 22:18:57 by Adam Ciarcinski | Files touched by this commit (629) | Package updated
Log message:
Revbump after boost update
   2017-12-11 13:28:09 by Jonathan Perkin | Files touched by this commit (1) | Package updated
Log message:
R: Fix PLIST.Darwin after update.
   2017-12-01 04:19:30 by Wen Heping | Files touched by this commit (2) | Package updated
Log message:
- Update to 3.4.3

Upstream changes:
CHANGES IN R 3.4.3:

  INSTALLATION on a UNIX-ALIKE:

    * A workaround has been added for the changes in location of
      time-zone files in macOS 10.13 'High Sierra' and again in
      10.13.1, so the default time zone is deduced correctly from the
      system setting when R is configured with --with-internal-tzcode
      (the default on macOS).

    * R CMD javareconf has been updated to recognize the use of a Java
      9 SDK on macOS.

  BUG FIXES:

    * raw(0) & raw(0) and raw(0) | raw(0) again return raw(0) (rather
      than logical(0)).

    * intToUtf8() converts integers corresponding to surrogate code
      points to NA rather than invalid UTF-8, as well as values larger
      than the current Unicode maximum of 0x10FFFF.  (This aligns with
      the current RFC3629.)

    * Fix calling of methods on S4 generics that dispatch on ... when
      the call contains ....

    * Following Unicode 'Corrigendum 9', the UTF-8 representations of
      U+FFFE and U+FFFF are now regarded as valid by utf8ToInt().

    * range(c(TRUE, NA), finite = TRUE) and similar no longer return
      NA. (Reported by Lukas Stadler.)

    * The self starting function attr(SSlogis, "initial") now also
      works when the y values have exact minimum zero and is slightly
      changed in general, behaving symmetrically in the y range.

    * The printing of named raw vectors is now formatted nicely as for
      other such atomic vectors, thanks to Lukas Stadler.
   2017-10-30 12:49:38 by Jonathan Perkin | Files touched by this commit (1) | Package updated
Log message:
R: Add missing zoneinfo file from previous update.
   2017-10-21 04:40:56 by Mark Davies | Files touched by this commit (4) | Package updated
Log message:
R: update to 3.4.2

CHANGES IN R 3.4.2:

  NEW FEATURES:

    * Setting the LC_ALL category in Sys.setlocale() invalidates any
      cached locale-specific day/month names and the AM/PM indicator
      for strptime() (as setting LC_TIME has since R 3.1.0).

    * The version of LAPACK included in the sources has been updated to
      3.7.1, a bug-fix release.

    * The default for tools::write_PACKAGES(rds_compress=) has been
      changed to "xz" to match the compression used by CRAN.

    * c() and unlist() are now more efficient in constructing the
      names(.) of their return value, thanks to a proposal by Suharto
      Anggono.  (PR#17284)

CHANGES IN R 3.4.0:

  SIGNIFICANT USER-VISIBLE CHANGES:

    * (Unix-alike) The default methods for download.file() and url()
      now choose "libcurl" except for file:// URLs.  There will be
      small changes in the format and wording of messages, including in
      rare cases if an issue is a warning or an error.  For example,
      when HTTP re-direction occurs, some messages refer to the final
      URL rather than the specified one.

      Those who use proxies should check that their settings are
      compatible (see ?download.file: the most commonly used forms work
      for both "internal" and "libcurl").

    * table() has been amended to be more internally consistent and
      become back compatible to R <= 2.7.2 again.  Consequently,
      table(1:2, exclude = NULL) no longer contains a zero count for
      <NA>, but useNA = "always" continues to do so.

    * summary.default() no longer rounds, but its print method does
      resulting in less extraneous rounding, notably of numbers in the
      ten thousands.

    * factor(x, exclude = L) behaves more rationally when x or L are
      character vectors.  Further, exclude = <factor> now behaves as
      documented for long.

    * Arithmetic, logic (&, |) and comparison (aka 'relational', e.g.,
      <, ==) operations with arrays now behave consistently, notably
      for arrays of length zero.

      Arithmetic between length-1 arrays and longer non-arrays had
      silently dropped the array attributes and recycled.  This now
      gives a warning and will signal an error in the future, as it has
      always for logic and comparison operations in these cases (e.g.,
      compare matrix(1,1) + 2:3 and matrix(1,1) < 2:3).

    * The JIT ('Just In Time') byte-code compiler is now enabled by
      default at its level 3. This means functions will be compiled on
      first or second use and top-level loops will be compiled and then
      run.  (Thanks to Tomas Kalibera for extensive work to make this
      possible.)
     For now, the compiler will not compile code containing explicit
      calls to browser(): this is to support single stepping from the
      browser() call.

      JIT compilation can be disabled for the rest of the session using
      compiler::enableJIT(0) or by setting environment variable
      R_ENABLE_JIT to 0.

    * xtabs() works more consistently with NAs, also in its result no
      longer setting them to 0.  Further, a new logical option addNA
      allows to count NAs where appropriate.  Additionally, for the
      case sparse = TRUE, the result's dimnames are identical to the
      default case's.

    * Matrix products now consistently bypass BLAS when the inputs have
      NaN/Inf values. Performance of the check of inputs has been
      improved. Performance when BLAS is used is improved for
      matrix/vector and vector/matrix multiplication (DGEMV is now used
      instead of DGEMM).

      One can now choose from alternative matrix product
      implementations _via_ options(matprod = ).  The "internal"
      implementation is not optimized for speed but consistent in
      precision with other summations in R (using long double
      accumulators where available).  "blas" calls BLAS directly for
      best speed, but usually with undefined behavior for inputs with
      NaN/Inf.

  NEW FEATURES:

    * User errors such as integrate(f, 0:1, 2) are now caught.

    * Add signature argument to debug(), debugonce(), undebug() and
      isdebugged() for more conveniently debugging S3 and S4 methods.
      (Based on a patch by Gabe Becker.)

    * Add utils::debugcall() and utils::undebugcall() for debugging the
      function that would be called by evaluating the given expression.
      When the call is to an S4 generic or standard S3 generic,
      debugcall() debugs the method that would be dispatched. A number
      of internal utilities were added to support this, most notably
      utils::isS3stdGeneric().  (Based on a patch by Gabe Becker.)

And many more - see the NEWS file for details.
   2017-10-18 18:14:30 by Adam Ciarcinski | Files touched by this commit (4)
Log message:
R: pkgsrc changes

PkgSrc changes:
* On Darwin, use Aqua interface instead of X11
* Cairo support also requires Pango
* Allow Cairo with other backends, not only X11 (e.g. to make it work on Darwin)
   2017-10-06 22:47:37 by Rumko | Files touched by this commit (5)
Log message:
math/R: better fix for fbsd

Also move fixes from configure to configure.ac
m4/R.m4 fix by @joerg

Oked @joerg