./math/R-genetics, Classes and methods for handling genetic data

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Branch: CURRENT, Version: 1.3.8.1nb1, Package name: R-genetics-1.3.8.1nb1, Maintainer: pkgsrc-users

Classes and methods for handling genetic data. Includes classes to
represent genotypes and haplotypes at single markers up to multiple
markers on multiple chromosomes. Function include allele frequencies,
flagging homo/heterozygotes, flagging carriers of certain alleles,
estimating and testing for Hardy-Weinberg disequilibrium, estimating
and testing for linkage disequilibrium, ...


Required to run:
[math/R-gdata] [math/R-mvtnorm] [math/R-gtools] [math/R] [math/R-combinat]

Master sites: (Expand)


Version history: (Expand)


CVS history: (Expand)


   2016-07-09 08:39:18 by Thomas Klausner | Files touched by this commit (1068) | Package updated
Log message:
Bump PKGREVISION for perl-5.24.0 for everything mentioning perl.
   2016-04-09 15:34:16 by Wen Heping | Files touched by this commit (2) | Package updated
Log message:
Update to 1.3.8.1

No upstream changelog.
   2015-11-04 00:33:46 by Alistair G. Crooks | Files touched by this commit (262)
Log message:
Add SHA512 digests for distfiles for math category

Problems found locating distfiles:
	Package dfftpack: missing distfile dfftpack-20001209.tar.gz
	Package eispack: missing distfile eispack-20001130.tar.gz
	Package fftpack: missing distfile fftpack-20001130.tar.gz
	Package linpack: missing distfile linpack-20010510.tar.gz
	Package minpack: missing distfile minpack-20001130.tar.gz
	Package odepack: missing distfile odepack-20001130.tar.gz
	Package py-networkx: missing distfile networkx-1.10.tar.gz
	Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz
	Package quadpack: missing distfile quadpack-20001130.tar.gz

Otherwise, existing SHA1 digests verified and found to be the same on
the machine holding the existing distfiles (morden).  All existing
SHA1 digests retained for now as an audit trail.
   2015-06-12 12:52:19 by Thomas Klausner | Files touched by this commit (3152)
Log message:
Recursive PKGREVISION bump for all packages mentioning 'perl',
having a PKGNAME of p5-*, or depending such a package,
for perl-5.22.0.
   2014-05-30 01:38:20 by Thomas Klausner | Files touched by this commit (3049)
Log message:
Bump for perl-5.20.0.
Do it for all packages that
* mention perl, or
* have a directory name starting with p5-*, or
* depend on a package starting with p5-
like last time, for 5.18, where this didn't lead to complaints.
Let me know if you have any this time.
   2013-05-31 14:42:58 by Thomas Klausner | Files touched by this commit (2880)
Log message:
Bump all packages for perl-5.18, that
a) refer 'perl' in their Makefile, or
b) have a directory name of p5-*, or
c) have any dependency on any p5-* package

Like last time, where this caused no complaints.
   2013-01-24 03:24:15 by Wen Heping | Files touched by this commit (2) | Package updated
Log message:
Update to 1.3.8
Update LICENSE

Upstream changes:
genetics 1.3.8 - 2012-12-14
---------------------------

Bug fixes:

- Regenerate broken PDF files in inst/doc.

genetics 1.3.7 - 2012-09-14
---------------------------

Enhancements:

- Improve descripiton of last examples in manual page for HWE.test().

Other Changes:

- Correct warnings issued by recent versions of R CMD CHECK.
   2012-04-15 18:54:17 by Brook Milligan | Files touched by this commit (2) | Package updated
Log message:
Updated to genetics v1.3.6, added LICENSE (commented) and updated MAINTAINER.