/R-genetics, Classes and methods for handling genetic data
220.127.116.11nb1, Package name:
R-genetics-18.104.22.168nb1, Maintainer: pkgsrc-users
Classes and methods for handling genetic data. Includes classes to
represent genotypes and haplotypes at single markers up to multiple
markers on multiple chromosomes. Function include allele frequencies,
flagging homo/heterozygotes, flagging carriers of certain alleles,
estimating and testing for Hardy-Weinberg disequilibrium, estimating
and testing for linkage disequilibrium, ...
Required to run:
Master sites: (Expand)
Version history: (Expand)
- (2016-07-09) Updated to version: R-genetics-22.214.171.124nb1
- (2016-04-09) Updated to version: R-genetics-126.96.36.199
- (2015-06-13) Updated to version: R-genetics-1.3.8nb3
- (2014-05-30) Updated to version: R-genetics-1.3.8nb2
- (2013-06-01) Updated to version: R-genetics-1.3.8nb1
- (2013-01-24) Updated to version: R-genetics-1.3.8
CVS history: (Expand)
| 2016-07-09 08:39:18 by Thomas Klausner | Files touched by this commit (1068) | |
Bump PKGREVISION for perl-5.24.0 for everything mentioning perl.
| 2016-04-09 15:34:16 by Wen Heping | Files touched by this commit (2) | |
Update to 188.8.131.52
No upstream changelog.
| 2015-11-04 00:33:46 by Alistair G. Crooks | Files touched by this commit (262) |
Add SHA512 digests for distfiles for math category
Problems found locating distfiles:
Package dfftpack: missing distfile dfftpack-20001209.tar.gz
Package eispack: missing distfile eispack-20001130.tar.gz
Package fftpack: missing distfile fftpack-20001130.tar.gz
Package linpack: missing distfile linpack-20010510.tar.gz
Package minpack: missing distfile minpack-20001130.tar.gz
Package odepack: missing distfile odepack-20001130.tar.gz
Package py-networkx: missing distfile networkx-1.10.tar.gz
Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz
Package quadpack: missing distfile quadpack-20001130.tar.gz
Otherwise, existing SHA1 digests verified and found to be the same on
the machine holding the existing distfiles (morden). All existing
SHA1 digests retained for now as an audit trail.
| 2015-06-12 12:52:19 by Thomas Klausner | Files touched by this commit (3152) |
Recursive PKGREVISION bump for all packages mentioning 'perl',
having a PKGNAME of p5-*, or depending such a package,
| 2014-05-30 01:38:20 by Thomas Klausner | Files touched by this commit (3049) |
Bump for perl-5.20.0.
Do it for all packages that
* mention perl, or
* have a directory name starting with p5-*, or
* depend on a package starting with p5-
like last time, for 5.18, where this didn't lead to complaints.
Let me know if you have any this time.
| 2013-05-31 14:42:58 by Thomas Klausner | Files touched by this commit (2880) |
Bump all packages for perl-5.18, that
a) refer 'perl' in their Makefile, or
b) have a directory name of p5-*, or
c) have any dependency on any p5-* package
Like last time, where this caused no complaints.
| 2013-01-24 03:24:15 by Wen Heping | Files touched by this commit (2) | |
Update to 1.3.8
genetics 1.3.8 - 2012-12-14
- Regenerate broken PDF files in inst/doc.
genetics 1.3.7 - 2012-09-14
- Improve descripiton of last examples in manual page for HWE.test().
- Correct warnings issued by recent versions of R CMD CHECK.
| 2012-04-15 18:54:17 by Brook Milligan | Files touched by this commit (2) | |
Updated to genetics v1.3.6, added LICENSE (commented) and updated MAINTAINER.