./math/R-hwde, Models and tests for departure from Hardy-Weinberg equilibrium

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Branch: CURRENT, Version: 0.67, Package name: R-hwde-0.67, Maintainer: pkgsrc-users

Fits models for genotypic disequilibria, as described in Huttley and
Wilson (2000), Weir (1996) and Weir and Wilson (1986). Contrast terms
are available that account for first order interactions between loci.
Also implements, for a single locus in a single population, a
conditional exact test for Hardy-Weinberg equilibrium


Required to run:
[math/R]

Required to build:
[pkgtools/cwrappers]

Master sites: (Expand)


Version history: (Expand)


CVS history: (Expand)


   2016-04-09 13:14:28 by Wen Heping | Files touched by this commit (2) | Package updated
Log message:
Update to 0.67

Upstream changlog:
Changes in hwde version 0.66

CORRECTIONS TO DATA

    o Data in the dataset mendelABC was in error.  Substantial corrections
      have been made.  (Thanks to Boris Igic for drawing the errrors to
      our attention.)
   2015-11-04 00:33:46 by Alistair G. Crooks | Files touched by this commit (262)
Log message:
Add SHA512 digests for distfiles for math category

Problems found locating distfiles:
	Package dfftpack: missing distfile dfftpack-20001209.tar.gz
	Package eispack: missing distfile eispack-20001130.tar.gz
	Package fftpack: missing distfile fftpack-20001130.tar.gz
	Package linpack: missing distfile linpack-20010510.tar.gz
	Package minpack: missing distfile minpack-20001130.tar.gz
	Package odepack: missing distfile odepack-20001130.tar.gz
	Package py-networkx: missing distfile networkx-1.10.tar.gz
	Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz
	Package quadpack: missing distfile quadpack-20001130.tar.gz

Otherwise, existing SHA1 digests verified and found to be the same on
the machine holding the existing distfiles (morden).  All existing
SHA1 digests retained for now as an audit trail.
   2013-08-30 14:58:11 by Joerg Sonnenberger | Files touched by this commit (2) | Package updated
Log message:
Update to R-hwde-0.63:
    o The vignette hwde.Rnw has been modified to add missing text and to
      conform to current Sweave markup conventions
    o Code for the functions hwde() and make.contrasts() has been modified
      so that R CMD check no longer reports "No visible binding for global
      variable 'oset'."
   2012-04-15 17:28:51 by Brook Milligan | Files touched by this commit (3) | Package updated
Log message:
Update to hwde v0.62, add LICENSE and regularize package files.
   2009-12-11 20:33:58 by Adam Ciarcinski | Files touched by this commit (2) | Package updated
Log message:
Update to the latest version of the module along with R update
   2008-10-14 08:41:35 by Mark Davies | Files touched by this commit (2) | Package updated
Log message:
Update R-hwde to 0.5

Changes unknown
   2007-10-25 18:59:59 by Johnny C. Lam | Files touched by this commit (980)
Log message:
Remove empty PLISTs from pkgsrc since revision 1.33 of plist/plist.mk
can handle packages having no PLIST files.
   2007-02-22 20:27:30 by Thomas Klausner | Files touched by this commit (721)
Log message:
Whitespace cleanup, courtesy of pkglint.
Patch provided by Sergey Svishchev in private mail.