./math/py-rpy, R interface for Python

[ CVSweb ] [ Homepage ] [ RSS ] [ Required by ] [ Add to tracker ]


Branch: CURRENT, Version: 2.9.1, Package name: py36-rpy-2.9.1, Maintainer: pkgsrc-users

RPy is a very simple, yet robust, Python interface to the R
Programming Language. It can manage all kinds of R objects and can
execute arbitrary R functions (including the graphic functions).
All the errors from the R language are converted to Python exceptions.
Any modules that later were installed on the R system, can easily
be used from within Python, without introducing any changes.


Required to run:
[lang/g95] [math/R] [devel/py-setuptools] [devel/pcre] [databases/py-sqlite3] [math/py-numpy] [textproc/py-jinja2] [lang/py-six] [lang/python36]

Required to build:
[pkgtools/cwrappers]

Master sites:

SHA1: 17aaa58ac59430e40c86db8796794f9da0dd4c2d
RMD160: 43251a017d6000e7e2d2d473cf10f683e14ea006
Filesize: 188.376 KB

Version history: (Expand)


CVS history: (Expand)


   2017-11-28 10:07:23 by Adam Ciarcinski | Files touched by this commit (3) | Package updated
Log message:
py-rpy: updated to 2.9.1

Release 2.9.1

Changes
-------
- Fixing issue 432 (see Section Bugs fixed below) involved removed the method
  `__reduce__` previously provided for all rpy2 objects representing R objects.

Bugs fixed
----------
- An error when installing with an unsupported R version was fixed.
- The docstring for `rinterface.endr()` was improperly stating that the function \ 
was not taking
  any argument.
- Target version of dplyr and tidyr are now 0.7.4 and 0.7.2 respectively.
- Fixed memory leak when pickling objects. Fixing the leak caused a
  slight change in the API (see Section Changes above).
- Conversion to :mod:`pandas` now handling R ordered factor.
- :mod:`jinja2` was not listed as a dependency
   2017-10-18 18:17:12 by Adam Ciarcinski | Files touched by this commit (3) | Package updated
Log message:
py-rpy: update to 2.9.0

Release 2.9.0:

New features

- New module :mod:`rpy2.situation` to extract and report informations
  about the environment, such as where is the R HOME, what is the
  version of R, what is the version of R rpy2 was built with, etc...
  The module is also designed to be run directly and provide diagnostics:
  `python -m rpy2.situation`.

- :meth:`Environment.values`, :meth:`Environment.pop`,
  :meth:`Environment.popitems`, :meth:`Environment.clear`
  to match :meth:`dict.values`,
  :meth:`dict.pop`, :meth:`dict.popitems`, :meth:`dict.clear`.

- :class:`VectorOperationsDelegator` now has a method `__matmul__` to implement
  Python's matrix multiplication operator (PEP-0645).

- A rule to convert R POSIXct vectors to pandas Timestamp vectors was added.

- method :meth:`_repr_html_` for R vectors to display HTML in jupyter.

Changes

- Starting several times the singleton :class:`EventProcessor` longer results
  in a :class:`RuntimeError`.

- The target version for the R package `dplyr` mapped is now 0.7.1, and
  :func:`rpy2.robjects.lib.dplyr.src_dt` and
  :func:`rpy2.robjects.lib.dplyr.src_desc` are no longer present.

- :meth:`Environment.keys` is now a iterator to match :meth:`dict.keys`,
  also an interator in Python 3.

- Target version of `ggplot2` library is 2.2.1.

- Option `stringsasfactors` in the constructor for the class `DataFrame`. If \ 
`False`, the
  strings are no longer converted to factors. When converting from pandas data frames
  the default is to no longer convert columns of strings to factors.

- The R "magic" for jupyter is now more consistently using the \ 
conversion system, and the
  use of custom converters through the magic argument `-c` will work as expected.

- Docker-related files moved to directory docker/ (where variants image for rpy2 \ 
are available)

Bugs fixed

- :func:`numpy.float128` is not available on all platforms. The unit test
  for it is now skipped on systems where it is not present

- R pairlist objects can now be sliced.

- Passing parameters names that are empty string to R function was
  causing a segfault.

- Trying to build an atomic R vector from a Python object that has a length,
  but it not a sequence nor an iterator was causing a segfault
   2016-10-03 14:25:37 by Thomas Klausner | Files touched by this commit (5)
Log message:
Remove some dead code, python-3.3 is no more.
   2016-06-08 19:43:49 by Thomas Klausner | Files touched by this commit (356)
Log message:
Switch to MASTER_SITES_PYPI.
   2015-11-04 00:33:46 by Alistair G. Crooks | Files touched by this commit (262)
Log message:
Add SHA512 digests for distfiles for math category

Problems found locating distfiles:
	Package dfftpack: missing distfile dfftpack-20001209.tar.gz
	Package eispack: missing distfile eispack-20001130.tar.gz
	Package fftpack: missing distfile fftpack-20001130.tar.gz
	Package linpack: missing distfile linpack-20010510.tar.gz
	Package minpack: missing distfile minpack-20001130.tar.gz
	Package odepack: missing distfile odepack-20001130.tar.gz
	Package py-networkx: missing distfile networkx-1.10.tar.gz
	Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz
	Package quadpack: missing distfile quadpack-20001130.tar.gz

Otherwise, existing SHA1 digests verified and found to be the same on
the machine holding the existing distfiles (morden).  All existing
SHA1 digests retained for now as an audit trail.
   2015-04-14 13:40:32 by Thomas Klausner | Files touched by this commit (14)
Log message:
Remove more references to python-2.6.
   2015-04-14 01:12:44 by Blue Rats | Files touched by this commit (94)
Log message:
Removing python26. EOL'd quite some ago and discussed a couple times on
tech-pkg@ and pkgsrc-users@.
   2015-04-12 12:04:08 by Thomas Klausner | Files touched by this commit (1) | Package updated
Log message:
Add py-sqlite3 dependency. Fixes last issue from PR 49817.
Bump PKGREVISION.