Path to this page:
NOTICE: This package has been removed from pkgsrc./
wip/R-VGAM,
Vector Generalized Linear and Additive Models
Branch: CURRENT,
Version: 1.0.2,
Package name: R-VGAM-1.0.2,
Maintainer: mishkaVector generalized linear and additive models, and associated models
(Reduced-Rank VGLMs, Quadratic RR-VGLMs, Reduced-Rank VGAMs). This
package fits many models and distribution by maximum likelihood
estimation (MLE) or penalized MLE. Also fits constrained ordination
models in ecology.
Required to run:[
math/R]
Master sites: (Expand)
Version history: (Expand)
- (2018-01-23) Package deleted from pkgsrc
- (2017-11-23) Package has been reborn
- (2017-05-02) Package has been reborn
- (2017-05-01) Package deleted from pkgsrc
- (2016-09-20) Updated to version: R-VGAM-1.0.2
- (2016-01-23) Package has been reborn
CVS history: (Expand)
2013-06-12 19:37:31 by Mike M. Volokhov | Files touched by this commit (2) |
Log message:
Update VGAM to version 0.9.1.
Major changes since 0.9.0:
o A companion package, called \pkg{VGAMdata}, is new.
Some large data sets previously in \pkg{VGAM} have
been shifted there, e.g., xs.nz and ugss.
In \pkg{VGAMdata} there is (new) oly12 and students.tw.
o pnorm2() argument names have changed from 'sd1' to
'var1', etc. and 'rho' to 'cov12'.
See documentation.
Warning given if it returns any negative value.
o Introduction of g-type arguments for grid search.
o Improved initial values for: lomax().
o Argument 'bred' works for poissonff().
o latvar() generic available, identical to lv(). But the
latter will be withdrawn soon.
o Rank() generic available for RR-VGLMs, QRR-VGLMs, CAO models.
o New function: pgamma.deriv(), pgamma.deriv.unscaled(),
vlm2lm.model.matrix().
o New VGAM family functions:
posbernoulli.b(), posbernoulli.t(), posbernoulli.tb(tau = 2 or 3).
These provide estimates of N as well as its standard error.
Also, truncgeometric() and truncweibull() are new.
Also, SUR() is new.
Also, binom2.rho.ss() does not work yet.
o New argument 'matrix.out = FALSE' for constraints.vlm().
o cm.vgam() has a few more arguments to provide more flexibility.
But there should be no changes for VGAM users at this stage.
o Renamed functions: confint_rrnb() is now renamed to
Confint.rrnb() and confint_nb1() is now renamed to Confint.nb1().
o Some changes to component names returned by Confint.rrnb() and
Confint.nb1(): $CI. and $SE. are uppercase.
o Some zero-inflated VGAM family functions return a
"vglm" object with @misc$pstr0 for the estimated
probability of a structural zero.
o New data set: olym12.
Note that Students.tw is earmarked for \pkg{VGAMdata}.
o Data sets renamed:
olympic renamed to olym08.
o Qvar() has a 'which.eta = 1' argument specifying which linear
predictor to use. So quasi-variances are now
available to models with M > 1 linear predictors.
o Tested okay on R 3.0.0.
|
2013-03-19 02:22:55 by Mike M. Volokhov | Files touched by this commit (17) |
Log message:
Move LICENSE right below COMMENT, that's where it usually should be.
Noted by <wiz> - thank you very much!
|
2012-08-30 20:51:22 by Mike M. Volokhov | Files touched by this commit (3) |
Log message:
Import R-VGAM-0.8.7 as wip/R-VGAM.
Vector generalized linear and additive models, and associated models
(Reduced-Rank VGLMs, Quadratic RR-VGLMs, Reduced-Rank VGAMs). This
package fits many models and distribution by maximum likelihood
estimation (MLE) or penalized MLE. Also fits constrained ordination
models in ecology.
|