./wip/jellyfish2, Fast, memory-efficient counting of k-mers in DNA

[ CVSweb ] [ Homepage ] [ RSS ] [ Required by ] [ Add to tracker ]

Branch: CURRENT, Version: 2.2.10, Package name: jellyfish-2.2.10, Maintainer: bacon

Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
A k-mer is a substring of length k, and counting the occurrences of all such
substrings is a central step in many analyses of DNA sequence. JELLYFISH can
count k-mers quickly by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase parallelism.


Required to run:
[wip/yaggo]

Required to build:
[pkgtools/cwrappers]

Master sites:

RMD160: 6de70b1f70d08f2c18e58b964e1e69b442193b9b
Filesize: 1096.849 KB

Version history: (Expand)