./wip/py-pysam, Python module for reading, manipulating and writing genomic data sets

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Branch: CURRENT, Version: 0.15.1, Package name: py27-pysam-0.15.1, Maintainer: bacon

pysam is a lightweight wrapper of the htslib C-API and provides facilities to
read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access
to the command line functionality of the samtools and bcftools packages. The
module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using
cython and a high-level API for convenient access to the data within standard
genomic file formats.


Required to run:
[www/curl] [devel/py-setuptools] [devel/py-cython] [lang/python27]

Required to build:
[pkgtools/cwrappers]

Master sites:

SHA1: e44068afc7520d211f4537873a963f16a6e53a8f
RMD160: f44ed399f80325bb084d254a3d16d97c6bc25f0f
Filesize: 3144.879 KB

Version history: (Expand)