./biology/nanocomp, Compare runs of Oxford Nanopore sequencing data and alignments

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Branch: CURRENT, Version: 1.15.0.20210602, Package name: NanoComp-1.15.0.20210602, Maintainer: pkgsrc-users

Compare multiple runs of long read sequencing data and
alignments. Creates violin plots or box plots of length, quality and
percent identity and creates dynamic, overlaying read length
histograms and a cumulative yield plot.

As of version 1.1.0 NanoComp will also create a static png image for
dynamic html plots, as the latter can get quite big and slow to load
for big datasets. This however requires that you install orca
(https://github.com/plotly/orca). Without orca the script still works,
but no static copies of dynamic plots are created.

I welcome all suggestions, bug reports, feature requests and
contributions. Please leave an issue
(https://github.com/wdecoster/nanocomp/issues) or open a pull
request.

If you use this tool, please consider citing our publication:
https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939.

Master sites:

Version history: (Expand)