./biology/nanostat, Statistics for Oxford Nanopore sequencing data and alignments

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Branch: CURRENT, Version: 1.5.0.20210108, Package name: NanoStat-1.5.0.20210108, Maintainer: pkgsrc-users

# NanoStat

Calculate various statistics from a long read sequencing dataset in
fastq, bam or albacore sequencing summary format.

#### Examples

NanoStat --fastq reads.fastq.gz --outdir statreports

NanoStat --summary sequencing_summary1.txt sequencing_summary2.txt \
sequencing_summary3.txt --readtype 1D2

NanoStat --bam alignment.bam alignment2.bam

I welcome all suggestions, bug reports, feature requests and
contributions. Please leave an issue
(https://github.com/wdecoster/nanostat/issues) or open a pull request.

If you use this tool, please consider citing our publication:
https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939.

Master sites:

Version history: (Expand)