Subject: CVS commit: pkgsrc/biology
From: Jason Bacon
Date: 2021-03-20 19:17:08
Message id: 20210320181708.47E60FA95@cvs.NetBSD.org

Log Message:
biology/htslib: Update to 1.12
biology/bcftools: Update to 1.12
biology/samtools: Update to 1.12

Numerous enhancements, performance improvements, and bug fixes since 1.10
Minimized pkgsrc patches in all three packages
Moved htslib to custom tarball since Github-generated distfiles are incomplete

Files:
RevisionActionfile
1.1removepkgsrc/biology/htslib/patches/patch-hfile__libcurl.c
1.1removepkgsrc/biology/htslib/patches/patch-cram_open__trace__file.c
1.1removepkgsrc/biology/htslib/patches/patch-Makefile
1.1removepkgsrc/biology/bcftools/patches/patch-misc_run-roh.pl
1.2modifypkgsrc/biology/samtools/patches/patch-Makefile
1.4modifypkgsrc/biology/samtools/distinfo
1.3modifypkgsrc/biology/samtools/PLIST
1.11modifypkgsrc/biology/samtools/Makefile
1.4modifypkgsrc/biology/htslib/distinfo
1.5modifypkgsrc/biology/htslib/buildlink3.mk
1.3modifypkgsrc/biology/htslib/PLIST
1.19modifypkgsrc/biology/htslib/Makefile
1.2modifypkgsrc/biology/bcftools/patches/patch-Makefile
1.3modifypkgsrc/biology/bcftools/distinfo
1.3modifypkgsrc/biology/bcftools/PLIST
1.10modifypkgsrc/biology/bcftools/Makefile