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CVS Commit History:
2024-04-11 16:46:53 by Jason Bacon | Files touched by this commit (1) |
Log message:
biology/rna-seq: Update to 1.3.0
Remove multiqc dep, responsible for 117 dependencies, including
gcc, llvm, and rust.
Add sra-tools, lz4, xz, and zstd
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2023-08-14 07:25:36 by Thomas Klausner | Files touched by this commit (1247) |
Log message:
*: recursive bump for Python 3.11 as new default
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2023-07-31 16:38:36 by Jason Bacon | Files touched by this commit (1) |
Log message:
biology/rna-seq: Add rna-star dep to metapackage
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2023-07-28 18:43:41 by Jason Bacon | Files touched by this commit (1) |
Log message:
biology/rna-seq: Add curl to metaport deps
Standardizing on a download tool simplifies pipelines
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2023-07-23 04:10:54 by Thomas Klausner | Files touched by this commit (1) |
Log message:
rna-seq: not for Python 27, 38
because py-multiqc isn't
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2023-07-22 15:23:46 by Jason Bacon | Files touched by this commit (1) |
Log message:
biology/rna-seq: Update to 1.2
Add py-multiqc to metapackage
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2023-01-23 22:41:53 by Jason Bacon | Files touched by this commit (1) |
Log message:
biology/rna-seq: Add www/webbrowser dep to metapackage
Used by test scripts to display FastQC reports
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2022-12-28 16:27:18 by Jason Bacon | Files touched by this commit (20) |
Log message:
Change MAINTAINER= to OWNER= on mission-critical packages
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2022-12-12 19:39:36 by Jason Bacon | Files touched by this commit (2) |
Log message:
biology/rna-seq: Core tools needed for RNA-Seq analysis
The rna-seq meta-package provides the core tools needed for performing
a typical RNA-Seq differential gene expression analysis, including
adapter trimming, quality control, alignment, and identification of
differentially expressed genes. Researchers may want additional tools
for data manipulation, gene ontology, etc.
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