./biology/mummer, System for aligning whole genome sequences

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Branch: pkgsrc-2008Q3, Version: 3.19, Package name: mummer-3.19, Maintainer: hdp

Mummer is a system for aligning whole genome sequences. Using an efficient
data structure called a suffix tree, the system is able rapidly to align
sequences containing millions of nucleotides whether in complete or draft
form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s
of contigs from a shotgun sequencing project with ease, and will align them to
another set of contigs or a genome using the NUCmer program included with the
system.


Required to run:
[lang/perl5]

Required to build:
[devel/gmake]

Master sites: (Expand)

SHA1: 8906bab6bd43b307461de8b5f44122a115799533
RMD160: 54f3c692efb8bde7762c48186919754f2a8c178c
Filesize: 3068.351 KB

Version history: (Expand)