./biology/mummer, System for aligning whole genome sequences

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Branch: pkgsrc-2010Q2, Version: 3.20, Package name: mummer-3.20, Maintainer: hdp

Mummer is a system for aligning whole genome sequences. Using an efficient
data structure called a suffix tree, the system is able rapidly to align
sequences containing millions of nucleotides whether in complete or draft
form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s
of contigs from a shotgun sequencing project with ease, and will align them to
another set of contigs or a genome using the NUCmer program included with the
system.


Required to run:
[lang/perl5]

Required to build:
[devel/gmake]

Master sites:

SHA1: 68d6742de93d8524236ccf538f32ba8bb4edf7cc
RMD160: 7e5fefef359c6a6ee49f2ebf14dc18caa19f48fb
Filesize: 3081.49 KB

Version history: (Expand)