Path to this page:
./
biology/mummer,
System for aligning whole genome sequences
Branch: pkgsrc-2011Q4,
Version: 3.20,
Package name: mummer-3.20,
Maintainer: hdpMummer is a system for aligning whole genome sequences. Using an efficient
data structure called a suffix tree, the system is able rapidly to align
sequences containing millions of nucleotides whether in complete or draft
form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s
of contigs from a shotgun sequencing project with ease, and will align them to
another set of contigs or a genome using the NUCmer program included with the
system.
Required to run:[
lang/perl5]
Required to build:[
devel/gmake]
Master sites:
SHA1: 68d6742de93d8524236ccf538f32ba8bb4edf7cc
RMD160: 7e5fefef359c6a6ee49f2ebf14dc18caa19f48fb
Filesize: 3081.49 KB
Version history: (Expand)
- (2012-01-08) Package added to pkgsrc.se, version mummer-3.20 (created)