./biology/mummer, System for aligning whole genome sequences

[ CVSweb ] [ Homepage ] [ RSS ] [ Required by ] [ Add to tracker ]

Branch: pkgsrc-2016Q4, Version: 3.20nb5, Package name: mummer-3.20nb5, Maintainer: hdp

Mummer is a system for aligning whole genome sequences. Using an efficient
data structure called a suffix tree, the system is able rapidly to align
sequences containing millions of nucleotides whether in complete or draft
form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s
of contigs from a shotgun sequencing project with ease, and will align them to
another set of contigs or a genome using the NUCmer program included with the

Master sites:

SHA1: 68d6742de93d8524236ccf538f32ba8bb4edf7cc
RMD160: 7e5fefef359c6a6ee49f2ebf14dc18caa19f48fb
Filesize: 3081.49 KB

Version history: (Expand)