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wip/cufflinks Transcript assembly, differential expression, regulation for RNA-Seq
wip/udunits2 Library for manipulating units of physical quantities
wip/stacks Software pipeline for building loci from short-read sequences
wip/vcglib Template library for manipulation of triangle meshes
wip/bamtools API and toolkit for handling BAM files
wip/sickle Windowed adaptive trimming tool for FASTQ files using quality
wip/scythe 3-end adapter contaminant trimmer
wip/slclust Single-linkage clustering with Jaccard similarity
wip/microbiomeutil Utilities for processing and analyzing 16S rRNA genes
wip/trimadap Tool for processing sequences in FASTA/FASTQ format