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wip/cufflinks Transcript assembly, differential expression, regulation for RNA-Seq
wip/uchime Algorithm for detecting chimeric sequences
wip/mothur Bioinformatics tool for the microbial ecology community
wip/stacks Software pipeline for building loci from short-read sequences
wip/vcglib Template library for manipulation of triangle meshes
wip/bamtools API and toolkit for handling BAM files
wip/scythe 3-end adapter contaminant trimmer
wip/microbiomeutil Utilities for processing and analyzing 16S rRNA genes
wip/trimadap Tool for processing sequences in FASTA/FASTQ format
wip/sickle Windowed adaptive trimming tool for FASTQ files using quality