./biology/glimmer, System for finding genes in microbial DNA

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Branch: CURRENT, Version: 2.13nb1, Package name: glimmer-2.13nb1, Maintainer: hdp

Glimmer (Gene Locator and Interpolated Markov Modeler) is a system for finding
genes in microbial DNA, especially the genomes of bacteria and archaea.
Glimmer uses interpolated Markov models (IMMs) to identify the coding regions
and distinguish them from noncoding DNA. The IMM approach uses a combination
of Markov models from 1st through 8th-order, weighting each model according to
its predictive power.


Master sites:

SHA1: 772752c3c1543066e4c156e5ec0a2e4f0a24c688
RMD160: 1667d04bc66f373d5df395e16b79b07814d3ea2c
Filesize: 77.986 KB

Version history: (Expand)


CVS history: (Expand)


   2015-11-02 19:42:23 by Alistair G. Crooks | Files touched by this commit (38)
Log message:
Add SHA512 digests for distfiles for biology category.

Existing SHA1 digests verified, all found to be the same on the
machine holding the existing distfiles (morden).  Existing SHA1
digests retained for now as an audit trail.
   2013-04-06 15:24:21 by Blue Rats | Files touched by this commit (21)
Log message:
".for variable names should not contain uppercase letters"
   2012-09-16 19:20:17 by Aleksey Cheusov | Files touched by this commit (1)
Log message:
CONFLICTS with generate-[0-9]*; ++pkgrevision
   2012-09-11 22:32:15 by Aleksej Saushev | Files touched by this commit (31)
Log message:
"user-destdir" is default these days
   2009-06-14 19:34:35 by Joerg Sonnenberger | Files touched by this commit (21)
Log message:
Remove @dirrm entries from PLISTs
   2008-03-03 02:10:06 by Johnny C. Lam | Files touched by this commit (16)
Log message:
Mechanical changes to add full DESTDIR support to packages that install
their files via a custom do-install target.
   2007-02-22 20:27:30 by Thomas Klausner | Files touched by this commit (721)
Log message:
Whitespace cleanup, courtesy of pkglint.
Patch provided by Sergey Svishchev in private mail.
   2006-02-26 14:44:02 by Georg Schwarz | Files touched by this commit (1)
Log message:
uses both C and C++