./wip/emboss-base, European Molecular Biology Open Software Suite

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Branch: CURRENT, Version: 2.9.0nb2, Package name: emboss-base-2.9.0nb2, Maintainer: dprice

EMBOSS stands for "The European Molecular Biology Open Software Suite"
and is a new, free Open Source software analysis package specially
developed for the needs of the molecular biology (e.g. EMBnet) user
community. The software automatically copes with data in a variety of
formats and even allows transparent retrieval of sequence data from
the web. Also, as extensive libraries are provided with the package,
it is a platform to allow other scientists to develop and release
software in true open source spirit. EMBOSS also integrates a
range of currently available packages and tools for sequence analysis
into a seamless whole.


Required to run:
[graphics/gd] [graphics/png]

Required to build:
[pkgtools/x11-links] [pkgtools/cwrappers]

Master sites:


Version history: (Expand)


CVS history: (Expand)


   2012-11-23 23:33:26 by othyro | Files touched by this commit (50)
Log message:
Mostly whitespace and blank line fixing. Some files also got minor
formatting corrections as well as other corrections.
   2012-09-29 00:07:28 by Aleksej Saushev | Files touched by this commit (66)
Log message:
Drop superfluous PKG_DESTDIR_SUPPORT, "user-destdir" is default these days.
Mark packages that don't or might probably not have staged installation.
   2012-09-02 13:14:09 by ndb | Files touched by this commit (10)
Log message:
DESTDIR.
   2011-10-26 15:48:59 by ndb | Files touched by this commit (1)
Log message:
Adopt X11.
   2011-10-26 15:48:17 by ndb | Files touched by this commit (1)
Log message:
Adopt X11.
   2010-12-26 06:01:21 by David Sainty | Files touched by this commit (78)
Log message:
Mechanically replace references to graphics/jpeg with the suitable
alternative from mk/jpeg.buildlink3.mk

This allows selection of an alternative jpeg library (namely the x86 MMX,
SSE, SSE2 accelerated libjpeg-turbo) via JPEG_DEFAULT=libjpeg-turbo, and
follows the current standard model for alternatives (fam, motif, fuse etc).

The mechanical edits were applied via the following script:

#!/bin/sh
for d in *; do
  [ -d "$d" ] || continue
  for i in "$d/"Makefile* "$d/"*.mk; do
    case "$i" in *.orig|*"*"*) continue;; esac
    out="$d/x"
    sed -e 's;graphics/jpeg/buildlink3\.mk;mk/jpeg.buildlink3.mk;g' \
        -e 's;BUILDLINK_PREFIX\.jpeg;JPEGBASE;g' \
        < "$i" > "$out"
    if cmp -s "$i" "$out"; then
      rm -f "$out"
    else
      echo "Edited $i"
      mv -f "$i" "$i.orig" && mv "$out" \ 
"$i"
    fi
  done
done
   2010-06-14 00:46:55 by Thomas Klausner | Files touched by this commit (271) | Package updated
Log message:
Bump PKGREVISION for libpng shlib name change.
Also add some patches to remove use of deprecated symbols and fix other
problems when looking for or compiling against libpng-1.4.x.
   2009-10-11 12:44:25 by Thomas Klausner | Files touched by this commit (267)
Log message:
Remove obsolete @dirrm lines.