/emboss-base, European Molecular Biology Open Software Suite
2.9.0nb2, Package name:
emboss-base-2.9.0nb2, Maintainer: dprice
EMBOSS stands for "The European Molecular Biology Open Software Suite"
and is a new, free Open Source software analysis package specially
developed for the needs of the molecular biology (e.g. EMBnet) user
community. The software automatically copes with data in a variety of
formats and even allows transparent retrieval of sequence data from
the web. Also, as extensive libraries are provided with the package,
it is a platform to allow other scientists to develop and release
software in true open source spirit. EMBOSS also integrates a
range of currently available packages and tools for sequence analysis
into a seamless whole.
Required to run:
] Required to build:
Version history: (Expand)
- (2016-01-23) Package has been reborn
- (2016-01-21) Package deleted from pkgsrc
- (2015-09-07) Package has been reborn
- (2015-09-07) Package deleted from pkgsrc
- (2015-06-03) Package has been reborn
- (2015-06-03) Package deleted from pkgsrc
CVS history: (Expand)
| 2012-11-23 23:33:26 by othyro | Files touched by this commit (50) |
Mostly whitespace and blank line fixing. Some files also got minor
formatting corrections as well as other corrections.
| 2012-09-29 00:07:28 by Aleksej Saushev | Files touched by this commit (66) |
Drop superfluous PKG_DESTDIR_SUPPORT, "user-destdir" is default these days.
Mark packages that don't or might probably not have staged installation.
| 2012-09-02 13:14:09 by ndb | Files touched by this commit (10) |
| 2011-10-26 15:48:59 by ndb | Files touched by this commit (1) |
| 2011-10-26 15:48:17 by ndb | Files touched by this commit (1) |
| 2010-12-26 06:01:21 by David Sainty | Files touched by this commit (78) |
Mechanically replace references to graphics/jpeg with the suitable
alternative from mk/jpeg.buildlink3.mk
This allows selection of an alternative jpeg library (namely the x86 MMX,
SSE, SSE2 accelerated libjpeg-turbo) via JPEG_DEFAULT=libjpeg-turbo, and
follows the current standard model for alternatives (fam, motif, fuse etc).
The mechanical edits were applied via the following script:
for d in *; do
[ -d "$d" ] || continue
for i in "$d/"Makefile* "$d/"*.mk; do
case "$i" in *.orig|*"*"*) continue;; esac
sed -e 's;graphics/jpeg/buildlink3\.mk;mk/jpeg.buildlink3.mk;g' \
-e 's;BUILDLINK_PREFIX\.jpeg;JPEGBASE;g' \
< "$i" > "$out"
if cmp -s "$i" "$out"; then
rm -f "$out"
echo "Edited $i"
mv -f "$i" "$i.orig" && mv "$out" \
| 2010-06-14 00:46:55 by Thomas Klausner | Files touched by this commit (271) | |
Bump PKGREVISION for libpng shlib name change.
Also add some patches to remove use of deprecated symbols and fix other
problems when looking for or compiling against libpng-1.4.x.
| 2009-10-11 12:44:25 by Thomas Klausner | Files touched by this commit (267) |
Remove obsolete @dirrm lines.