./wip/salmon, Transcript-level quantification of RNA-seq from lightweight alignments

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Branch: CURRENT, Version: 0.11.3, Package name: salmon-0.11.3, Maintainer: bacon

Salmon is a wicked-fast program to produce a highly-accurate, transcript-level
quantification estimates from RNA-seq data. Salmon achieves is accuracy and
speed via a number of different innovations, including the use of quasi-mapping
(accurate but fast-to-compute proxies for traditional read alignments), and
massively-parallel stochastic collapsed variational inference. The result is a
versatile tool that fits nicely into many differnt pipelines.


Required to run:
[archivers/unzip] [shells/bash] [devel/autoconf] [devel/boost-libs] [wip/tbb]

Required to build:
[devel/boost-headers] [pkgtools/cwrappers] [wip/cereal]

Master sites: (Expand)


Version history: (Expand)