./biology/glimmer, System for finding genes in microbial DNA

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Branch: pkgsrc-2008Q4, Version: 2.13, Package name: glimmer-2.13, Maintainer: hdp

Glimmer (Gene Locator and Interpolated Markov Modeler) is a system for finding
genes in microbial DNA, especially the genomes of bacteria and archaea.
Glimmer uses interpolated Markov models (IMMs) to identify the coding regions
and distinguish them from noncoding DNA. The IMM approach uses a combination
of Markov models from 1st through 8th-order, weighting each model according to
its predictive power.

Master sites:

SHA1: 772752c3c1543066e4c156e5ec0a2e4f0a24c688
RMD160: 1667d04bc66f373d5df395e16b79b07814d3ea2c
Filesize: 77.986 KB

Version history: (Expand)