./biology/vsearch, Versatile open-source tool for metagenomics

[ CVSweb ] [ Homepage ] [ RSS ] [ Required by ] [ Add to tracker ]

Branch: pkgsrc-2020Q4, Version: 2.13.4, Package name: vsearch-2.13.4, Maintainer: bacon

VSEARCH supports de novo and reference based chimera detection,
clustering, full-length and prefix dereplication, rereplication,
reverse complementation, masking, all-vs-all pairwise global
alignment, exact and global alignment searching, shuffling,
subsampling and sorting. It also supports FASTQ file analysis,
filtering, conversion and merging of paired-end reads.

The aim of this project is to create an alternative to the USEARCH
tool developed by Robert C. Edgar (2010).

Master sites:

SHA1: adb36075cf873620aebae6ab25f33cbac002065e
RMD160: e65a908014cbab903bef81b55c9e67003bb55458
Filesize: 228.871 KB

Version history: (Expand)