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(this page)| 2004-12-01 05:01:09 by Min Sik Kim | Files touched by this commit (2) |
Log message:
Update hmmer to 2.3.2. Patch provided by David Price in PR pkg/28483.
While here, enable pkgviews installation.
Changes:
-:- hmmsearch intermittently failed on Swissprot searches, on some
platforms (reports on AMD/Linux; Mac OS/X). (#h25)
-:- hmmpfam memory allocation strategy did not guarantee RAMLIMIT,
and could explode to very large allocations when searching
with large sequences. (#h26)
-:- technical improvements in handing dsq's (digitized sequences);
"bug" has no visible effects, except when compiling on
different platforms. (#h27)
-:- typo fix in P7Forward() recursion; typo may have had minor
effect on calculated scores. (#h28)
-:- hmmalign now includes --outformat and --oneline option for
specifying different output alignment formats than the default
Stockholm.
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| 2004-08-23 16:37:04 by Ben Collver | Files touched by this commit (2) |
Log message: Remove unnecessary -p following MKDIR commands. |
| 2004-08-16 04:47:49 by Ben Collver | Files touched by this commit (3) |
Log message: Make hmmer honor $MKDIR for cross-platform install. Addresses pr#26650 from Georg Schwarz. |
| 2004-04-11 06:06:09 by Soren Jacobsen | Files touched by this commit (2) |
Log message: Convert to buildlink3 and correct a spelling error in DESCR. |
| 2004-01-20 13:08:40 by Alistair G. Crooks | Files touched by this commit (15) |
Log message: Move WRKSRC definition away from the first paragraph in a Makefile. |
| 2003-09-26 07:21:04 by Thomas Klausner | Files touched by this commit (1) |
Log message: Add trailing slash to HOMEPAGE to placate pkglint. |
2003-09-26 05:52:47 by Jan Schaumann | Files touched by this commit (5) |  |
Log message: Initial import of hmmer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. HMMER is an implementation of profile HMM methods for sensitive database searches using multiple sequence alignments as queries. HMMER takes multiple sequence alignement as input and builds statistical model called "Hidden Markov Model" which can be used as a query into a sequence database to find and/or align additional homologues of the sequence family. |
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