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   2022-10-24 20:18:15 by Adam Ciarcinski | Files touched by this commit (2) | Package updated
Log message:
py-scipy: updated to 1.9.3

Issues closed for 1.9.3

scipy.interpolate.UnivariateSpline segfault
BUG: multivariate_normal returns a pdf for values outside its...
BUG: stats: inconsistency in docs and behavior of gmean and hmean
running scipy.interpolate.tests.test_fitpack::test_bisplev_integer_overflow...
test_bisplev_integer_overflow: Segmentation fault (core dumped)
Bug: setting iprint=0 hides all output from fmin_l_bfgs_b, but...
\`scipy.stats.mood\` does not correct for ties
ks_2samp throws \`RuntimeWarning: overflow encountered in double_scalars\`
\`shgo\` error since scipy 1.8.0.dev0+1529.803e52d
Input data validation for RectSphereBivariateSpline
BUG: binom.pmf - RuntimeWarning: divide by zero
BUG: scipy.optimize.minimize: Powell's method function evaluated...
BUG: lombscargle fails if argument is a view
BUG: Possible bug when using winsorize on pandas data instead...
BUG: stats.ttest_ind returns wrong p-values with permutations
odr.Model default meta value fails with __getattr__
BUG: Error in error message for incorrect sample dimension in...
BUG: dimension of isuppz in syevr is mistranslated
BUG: \`KDTree\`'s optional argument \`eps\` seems to have no...
dtype not preserved with operations on sparse arrays
BUG: \`stats.fit\` on \`boltzmann\` expects \`bound\` for \`lambda\`,...
BUG: Small oversight in sparse.linalg.lsmr?
BUG: Build failure due to problems with shebang line in cythoner.py
BUG: stats.rayleigh.fit: returns \`loc\` that is inconsistent...
BUG? Incorrect branch in \`LAMV\` / \`_specfunc.lamv\`
DOC: keepdims in stats.mode is incorrectly documented

Pull requests for 1.9.3

BUG: multivariate_normal returns a pdf for values outside its...
Bug: setting iprint=0 hides all output from fmin_l_bfgs_b, but...
BUG: stats: Reformulate loggamma._rvs to handle c << 1.
BUG: fix out-of-bound evaluations in optimize.minimize, powell...
BUG: fix powell evaluated outside limits
BUG: fix stats.rv_histogram for non-uniform bins
stats.mood: correct for when ties are present
BUG: fix a crash in \`fpknot\`
MAINT: stats: fix _contains_nan on Pandas Series
Fix ttest permutations
MAINT: fix SHGO extra arguments
BUG: Fix error in error message for incorrect sample dimension...
MAINT: stats.ks_2samp: always emit warning when exact method...
BUG: fix syevr series segfault by explicitly specifying operator...
BUG: optimize: Fix differential_evolution error message.
FIX: \`odr.Model\` error with default \`meta\` value
FIX: stats: ignore divide-by-zero warnings from Boost binom impl
MAINT: stats.vonmises: wrap rvs to -pi, pi interval
BUG: eps param no effect fixed
MAINT: Ensure Pythran input for lombscargle are contiguous
Detect integer overflow in bivariate splines in fitpackmodule.c,...
BUG: sparse: Fix indexing sparse matrix with empty index arguments.
FIX: spurious divide error with \`gmean\`
BUG: fix mutable data types as default arguments in \`ord.{Data,RealData}\`
MAINT: stats.boltzmann: correct _shape_info typo
BUG: interpolate: sanity check x and y in make_interp_spline(x,...
MAINT: avoid \`func_data\`, it conflicts with system header on...
BUG: interpolate: work array sizes for RectSphereBivariateSpline
BUG: linalg: Fix the XSLOW test test_sgesdd_lwork_bug_workaround()
MAINT: fix small LSMR problem
MAINT: stats.rayleigh: enforce constraint on location
FIX: special: use intended branching for \`lamv\` implementation
MAINT: stats.rv_discrete.pmf: should be zero at non-integer argument
REL: Prep for SciPy 1.9.3
BUG: special: Fix two XSLOW test failures.
MAINT: update meson.build to make it work on IBM i system
BLD: fix issue with incomplete threads dependency handling
Keepdims incorrectly documneted fix
MAINT: Handle numpy's deprecation of accepting out-of-bound integers.
BLD: fix invalid shebang for build helper script
   2022-10-10 10:46:13 by Adam Ciarcinski | Files touched by this commit (2) | Package updated
Log message:
py-scipy: updated to 1.9.2

Issues closed for 1.9.2

BUG: 1.9.0rc1: \`OptimizeResult\` not populated when \`optimize.milp\`...
BUG: \`sparse.hstack\` returns incorrect result when the stack...
BUG: optimize.minimize backwards compatability in scipy 1.9
BUG: using msvc + meson to build scipy --> cl cannot be used...
BUG: error from \`scipy.stats.mode\` with \`NaN\`s, \`axis !=...
BUG: scipy 1.7.3 wheels on PyPI require numpy<1.23 in contradiction...
BUG: ncf_gen::ppf(..) causes segfault
Pearson3 PPF does not function properly with negative skew.
BUG: OSX-64 Test failure test_ppf_against_tables getting NaN

Pull requests for 1.9.2

FIX: Updated dtype resolution in \`_stack_along_minor_axis\`
FIX: milp: return feasible solutions if available on time out
ENH: cibuildwheel infrastructure
MAINT: minimize, restore squeezed ((1.0)) addresses 16898
REL: prep for SciPy 1.9.2
DOC: update version switcher for 1.9.1 and pin theme to 0.9
MAINT: cast \`linear_sum_assignment\` to PyCFunction
BLD: use compiler flags in a more portable way
MAINT: stats.mode: fix bug with \`axis!=1\`, \`nan_policy='omit'\`,...
MAINT: fix NumPy upper bound
BLD: fix usage of \`get_install_data\`, which defaults to purelib
DOC: Update numpy supported versions for 1.9.2
BLD: fixes for building with MSVC and Intel Fortran
Rudimentary test for manylinux_aarch64 with cibuildwheel
BLD: make MKL detection a little more robust, add notes on TODOs
CI: Update cibuildwheel to 2.10.1
MAINT: stats.pearson3: fix ppf for negative skew
BUG: Fix numerical precision error of \`truncnorm.logcdf\` when...
FIX: ensure a hold on GIL before raising warnings/errors
TST: stats.studentized_range: fix incorrect test
MAINT: pyproject.toml: Update build system requirements
MAINT: 1.9.2 backports
   2022-10-05 22:54:31 by Adam Ciarcinski | Files touched by this commit (4) | Package updated
Log message:
py-scipy: updated to 1.9.1

SciPy 1.9.1 is a bug-fix release with no new features
compared to 1.9.0. Notably, some important meson build
fixes are included.

SciPy 1.9.0 is the culmination of 6 months of hard work. It contains
many new features, numerous bug-fixes, improved test coverage and better
documentation. There have been a number of deprecations and API changes
in this release, which are documented below. All users are encouraged to
upgrade to this release, as there are a large number of bug-fixes and
optimizations. Before upgrading, we recommend that users check that
their own code does not use deprecated SciPy functionality (to do so,
run your code with python -Wd and check for DeprecationWarning s).
Our development attention will now shift to bug-fix releases on the
1.9.x branch, and on adding new features on the main branch.

This release requires Python 3.8-3.11 and NumPy 1.18.5 or greater.

For running on PyPy, PyPy3 6.0+ is required.
   2022-07-30 18:13:48 by Havard Eidnes | Files touched by this commit (3)
Log message:
math/py-scipy: fix build on NetBSD/powerpc (at least!)

In the unuran part, omit defining _ISOC99_SOURCE.  I am told that
the ieeefp.h header should not be used with _ISOC99_SOURCE.  (Its
use comes from pyport.h.)  Lately I've seen this package fail to
build also for aarch64, have not verified that this fixes it, though
it's not entirely impossible.

Fixes what triggered PR#56892.

Bump PKGREVISION.
   2022-06-28 13:38:00 by Thomas Klausner | Files touched by this commit (3952)
Log message:
*: recursive bump for perl 5.36
   2022-05-27 18:59:51 by Tobias Nygren | Files touched by this commit (3)
Log message:
py-scipy: disable __builtin_prefetch completely for now

It failed with GCC too. There is some bad interaction with py-numpy,
probably related to patch-numpy_core_include_numpy_npy__common.h.
Unbreak the build until I have time to investigate this.
   2022-05-26 16:49:59 by Tobias Nygren | Files touched by this commit (2)
Log message:
py-scipy: disable __builtin_prefetch with clang
   2022-05-20 14:09:01 by Adam Ciarcinski | Files touched by this commit (3) | Package updated
Log message:
py-scipy: updated to 1.8.1

SciPy 1.8.1 is a bug-fix release with no new features
compared to 1.8.0. Notably, usage of Pythran has been
restored for Windows builds/binaries.
   2022-05-13 11:49:31 by Tobias Nygren | Files touched by this commit (2)
Log message:
py-scipy: redo NetBSD fix so it doesn't have side effects on other opsys

Previous workaround could fail to compile when double and long double are
effectively the same type.
   2022-05-03 17:14:54 by Tobias Nygren | Files touched by this commit (3)
Log message:
py-scipy: work around undefined PLT symbol "log1pl" on NetBSD. Bump.

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