2024-04-11 01:48:52 by Jason Bacon | Files touched by this commit (1) |
Log message:
biology/py-dnaio: Release to pkgsrc-users@
dnaio is used only by cutadapt, which has been replaced by
fastq-trim in my toolbox
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2024-02-15 22:45:02 by Thomas Klausner | Files touched by this commit (1) |
Log message:
py-dnaio: add missing tool
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2024-02-10 14:07:54 by Jason Bacon | Files touched by this commit (4) |
Log message:
biology/py-dnaio: Update to 1.2.0
Numerous bug fixes and enhancements since 0.9.1
Changes: https://github.com/marcelm/dnaio/tags
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2022-11-14 11:39:40 by Thomas Klausner | Files touched by this commit (3) | |
Log message:
py-dnaio: update to 0.9.1.
v0.9.1 (2022-08-01)
-------------------
* :pr:`85`: macOS wheels are now also built as part of the release procedure.
* :pr:`81`: API documentation improvements and minor code refactors for
readability.
v0.9.0 (2022-05-17)
-------------------
* :pr:`79`: Added a `records_are_mates` function to be used for checking whether
three or more records are mates of each other (by checking the ID).
* :pr:`74`, :pr:`68`: Made FASTQ parsing faster by implementing the check for
ASCII using SSE vector instructions.
* :pr:`72`: Added a `tutorial \
<https://dnaio.readthedocs.io/en/latest/tutorial.html>`_.
v0.8.0 (2022-03-26)
-------------------
* Preliminary documentation is available at
<https://dnaio.readthedocs.io/>.
* :pr:`53`: Renamed ``Sequence`` to `SequenceRecord`.
The previous name is still available as an alias
so that existing code will continue to work.
* When reading a FASTQ file, there is now a check that ensures that
all characters are ASCII.
* Function ``record_names_match`` is deprecated, use `SequenceRecord.is_mate` \
instead.
* Dropped Python 3.6 support as it is end-of-life.
v0.7.1 (2022-01-26)
-------------------
* :pr:`34`: Fix parsing of FASTA files that just contain a comment and no reads
v0.7.0 (2022-01-17)
-------------------
* @rhpvorderman contributed many performance improvements in :pr:`15`,
:pr:`17`, :pr:`18`, :pr:`20`, :pr:`21`, :pr:`22`, :pr:`23`. Reading
and writing FASTQ files and reading of paired-end FASTQ files was
sped up significantly. For example, reading uncompressed FASTQ is
50% faster (!) than before.
* :pr:`28`: Windows support added
v0.6.0 (2021-09-28)
-------------------
* :pr:`12`: Improve FASTQ writing speed twofold (thanks to @rhpvorderman)
v0.5.2 (2021-09-07)
-------------------
* :issue:`7`: Ignore a trailing "3" in the read id
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2022-01-04 21:55:40 by Thomas Klausner | Files touched by this commit (1595) |
Log message:
*: bump PKGREVISION for egg.mk users
They now have a tool dependency on py-setuptools instead of a DEPENDS
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2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73) |
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
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2021-10-07 15:19:44 by Nia Alarie | Files touched by this commit (73) |
Log message:
biology: Remove SHA1 hashes for distfiles
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2021-05-23 01:24:17 by Nia Alarie | Files touched by this commit (1) |
Log message:
py-dnaio: unbreak pkgsrc tree. revert removal of PYTHON_VERSIONS_INCOMPATIBLE.
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2021-05-21 13:38:13 by Adam Ciarcinski | Files touched by this commit (3) | |
Log message:
py-dnaio: updated to 0.5.1
v0.5.1
Add py.typed and distribute .pyi files
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2021-04-22 10:38:59 by Nia Alarie | Files touched by this commit (1) |
Log message:
py-dnaio: mark incompatible with python 2
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