Log message:
py-pydicom: updated to 2.4.4

pydicom v2.4.4

Fix search in help docs

Log message:
py-pydicom: updated to 2.4.3

Version 2.4.3

Fixes
-----

* Fixed pydicom codify error when relative path did not exist

Version 2.4.0

Changes
-------
* Removed support for Python 3.6 (EOL since December 2021)

Enhancements
------------
* Added attribute :attr:`~pydicom.valuerep.PersonName.alphabetic` (:pr:`1634`)
* Added attribute :attr:`~pydicom.tag.BaseTag.json_key` (:pr:`1648`)
* Added value validation for numerical VRs, add type validation for all
  validated VRs (:issue:`1414`)
* CLI commands now accept *pydicom* charset test files and CLI help shows
  Python Version (:pr:`1674`)
* Added support for Python 3.11 (:issue:`1658`)
* Added :class:`~pydicom.valuerep.ISfloat` to allow non-strict reading of
  existing files with float IS values (:issue:`1661`)
* Improved speed of creating and accessing highly nested structures
  (:issue:`1728`, :pr:`1734`)
* Switched to a pyproject.toml build process (:pr:`1792`)
* Updated DICOM and UID dicts to DICOM 2023b (:pr:`1803`)

Fixes
-----
* Fixed length validation of DS values with maximum length without a leading
  zero (:issue:`1632`)
* Increased download speed with progress bar for test data (:issue:`1611`)
* Fixed crash due to invalid private creator (:issue:`1638`)
* Fixed extremely long BytesLengthException error messages (:pr:`1683`)
* In codify, ensure unique variable names for DICOM keywords repeated
  in sequences, and handle unicode characters correctly (:issue:`1670`)
* Fixed handling of some invalid values in
  :meth:`~pydicom.dataset.Dataset.to_json_dict` if `suppress_invalid_tags` is
  set to `True` (:issue:`1693`)
* Fixed reading of data with 8 bits allocated, encoded in Big Endian transfer
  syntax using VR ``OW`` (:issue:`1680`)
* Fixed crash if reading regular dataset that has the SOP Class of a DICOMDIR
  (:issue:`1702`)
* Fixed wrong waveform data calculation when as_raw=False and baseline!=0 \ 
(:issue:`1667`)
* Fixed reading LUTData to expected size (:pr:`1747`)
* Fixed handling of AT VRs when codifying data elements (:issue:`1738`)

Pydicom Internals
-----------------
* In test suites, renamed 'setup' and 'teardown' methods, deprecated starting
  in pytest 7.2
* Use own fork of `CharPyLS` to handle builds with Python 3.11 (:issue:`1788`)

Log message:
py-pydicom: updated to 2.3.1

pydicom 2.3.1
Small fix to make 2.3.X compatible with Python 3.11.

Log message:
py-pydicom: updated to 2.3.0

Version 2.3.0
=================================

Changes
-------
* :meth:`DataElement.description<pydicom.dataelem.DataElement.description>` is
  deprecated and will be removed in v3.0, use
  :attr:`DataElement.name<pydicom.dataelem.DataElement.name>` instead
* Updated the private dictionary
* :attr:`~pydicom.config.enforce_valid_values` is deprecated in favor of
  :attr:`~pydicom.config.settings.reading_validation_mode`
* Added `download` parameter to :func:`~pydicom.data.get_testdata_file`
  to allow skipping downloading the file if missed locally (:pr:`1617`)

Enhancements
------------
* Values are now validated for valid length, allowed character set and format
  on reading and writing. Depending on the value of
  :attr:`~pydicom.config.settings.reading_validation_mode`
  and :attr:`~pydicom.config.settings.writing_validation_mode`
  a warning is logged, an exception is raised, or the validation is skipped.
* Added :class:`~pydicom.valuerep.VR` enum (:pr:`1500`)
* UIDs for all Storage SOP Classes have been added to the ``uid`` module
  (:issue:`1498`)
* Use rle_handler as last resort handler for decoding RLE encoded data as it is
  the slowest handler (:issue:`1487`)
* Added, enhanced, or removed a number of Mitra private dictionary entries \ 
(:pr:`1588`)
* Added support for unpacking bit-packed data without using NumPy to
  :func:`~pydicom.pixel_data_handlers.utils.unpack_bits`(:pr:`1594`)
* Added :func:`~pydicom.pixel_data_handlers.util.expand_ybr422` for expanding
  uncompressed ``YBR_FULL_422`` data to ``YBR_FULL`` (:pr:`1593`)
* Replacement of ``UN`` VR with ``SQ`` VR for undefined length data elements
  (introduced in 2.2.2), can now be configured via
  :attr:`~pydicom.config.settings.infer_sq_for_un_vr`
* Updated dictionaries to DICOM 2022a

Fixes
-----
* Fixed odd-length **OB** values not being padded during write (:issue:`1511`)
* Fixed Hologic private dictionary entry (0019xx43)
* Fixed Mitra global patient ID private dictionary entry (:pr:`1588`)
* Fixed :meth:`~pydicom.dataset.Dataset.compress` not setting the correct
  encoding for the rest of the dataset (:issue:`1565`)
* Fixed `AttributeError` on deep copy of :class:`~pydicom.dataset.FileDataset`
  (:issue:`1571`)
* Fixed an exception during pixel decoding if using GDCM < 2.8.8 on Windows
  (:issue:`1581`)
* Fixed crashes on Windows and MacOS when using the GDCM plugin to compress
  into *RLE Lossless* (:issue:`1581`)
* Fixed ``dir(Dataset())`` not returning class attributes (:issue:`1599`)
* Fixed bad DICOMDIR offsets when using :meth:`FileSet.write()
  <pydicom.fileset.FileSet.write>` with a *Directory Record Sequence* using
  undefined length items (:issue:`1596`)
* Assigning a list of length one as tag value is now correctly handled as
  assigning the single value (:issue:`1606`)
* Fixed an exception with multiple deferred reads with file-like objects
  (:issue:`1609`)

Log message:
python: egg.mk: add USE_PKG_RESOURCES flag

This flag should be set for packages that import pkg_resources
and thus need setuptools after the build step.

Set this flag for packages that need it and bump PKGREVISION.

Log message:
*: bump PKGREVISION for egg.mk users

They now have a tool dependency on py-setuptools instead of a DEPENDS

Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes

Log message:
biology: Remove SHA1 hashes for distfiles

Log message:
py-pydicom: updated to 2.2.2

Version 2.2.0

Changes
-------
* Data elements with a VR of **AT** must now be set with values
  acceptable to :func:`~pydicom.tag.Tag`, and are always stored as a
  :class:`~pydicom.tag.BaseTag`.  Previously, any Python type could be
  set.
* :meth:`BaseTag.__eq__()<pydicom.tag.BaseTag.__eq__>` returns ``False`` rather
  than raising an exception when the operand cannot be converted to
  :class:`~pydicom.tag.BaseTag` (:pr:`1327`)
* :meth:`DA.__str__()<pydicom.valuerep.DA.__str__>`,
  :meth:`DT.__str__()<pydicom.valuerep.DT.__str__>` and
  :meth:`TM.__str__()<pydicom.valuerep.TM.__str__>` return valid DICOM
  strings instead of the formatted date and time representations
  (:issue:`1262`)
* If comparing :class:`~pydicom.dataset.FileDataset` instances, the file
  metadata is now ignored. This makes it possible to compare a
  :class:`~pydicom.dataset.FileDataset` object with a
  :class:`~pydicom.dataset.Dataset` object.
* :func:`~pydicom.pixel_data_handlers.rle_handler.rle_encode_frame` is
  deprecated and will be removed in v3.0, use
  :meth:`~pydicom.dataset.Dataset.compress` or
  :attr:`~pydicom.encoders.RLELosslessEncoder` instead.
* :func:`~pydicom.filereader.read_file` is deprecated and will be removed in
  v3.0, use :func:`~pydicom.filereader.dcmread` instead.
* :func:`~pydicom.filewriter.write_file` is deprecated and will be removed in
  v3.0, use :func:`~pydicom.filewriter.dcmwrite` instead.
* Data dictionaries updated to version 2021b of the DICOM Standard
* :class:`~pydicom.dataset.Dataset` no longer inherits from :class:`dict`

Enhancements
------------
* Added a command-line interface for pydicom.  Current subcommands are:

    * ``show``: display all or part of a DICOM file
    * ``codify`` to produce Python code for writing files or sequence items
      from scratch.

  Please see the :ref:`cli_guide` for examples and details
  of all the options for each command.
* A field containing an invalid number of bytes will result in a warning
  instead of an exception when
  :attr:`~pydicom.config.convert_wrong_length_to_UN` is set to ``True``.
* Private tags known via the private dictionary will now get the configured
  VR if read from a dataset instead of **UN** (:issue:`1051`).
* While reading explicit VR, a switch to implicit VR will be silently attempted
  if the VR bytes are not valid VR characters, and config option
  :attr:`~pydicom.config.assume_implicit_vr_switch` is ``True`` (default)
* New functionality to help with correct formatting of decimal strings (**DS**)

    * Added :func:`~pydicom.valuerep.is_valid_ds` to check whether a string is
      valid as a DICOM decimal string and
      :func:`~pydicom.valuerep.format_number_as_ds` to format a given ``float``
      or ``Decimal`` as a DS while retaining the highest possible level of
      precision
    * If :attr:`~pydicom.config.enforce_valid_values` is set to ``True``, all
      **DS** objects created will be checked for the validity of their string
      representations.
    * Added optional ``auto_format`` parameter to the init methods of
      :class:`~pydicom.valuerep.DSfloat` and
      :class:`~pydicom.valuerep.DSdecimal` and the :func:`~pydicom.valuerep.DS`
      factory function to allow explicitly requesting automatic formatting of
      the string representations of these objects when they are constructed.
* Added methods to construct :class:`~pydicom.valuerep.PersonName` objects
  from individual components of names (``family_name``, ``given_name``, etc.).
  See :meth:`~pydicom.valuerep.PersonName.from_named_components` and
  :meth:`~pydicom.valuerep.PersonName.from_named_components_veterinary`.
* Added support for downloading the large test files with the `requests
  <https://docs.python-requests.org/en/master/>`_ package in addition to
  :mod:`urllib.request` (:pr:`1340`)
* Ensured :func:`~pydicom.pixel_data_handlers.util.convert_color_space` uses
  32-bit floats for calculation, added `per_frame` flag to allow frame-by-frame
  processing and improved the speed by ~20-60% (:issue:`1348`)
* Optimisations for RLE encoding using *pydicom* (~40% faster).
* Added support for faster decoding (~4-5x) and encoding (~20x) of *RLE Lossless*
  *Pixel Data* via the `pylibjpeg-rle
  <https://github.com/pydicom/pylibjpeg-rle>`_ plugin (:pr:`1361`, :pr:`1372`).
* Added :func:`Dataset.compress()<pydicom.dataset.Dataset.compress>` \ 
function for
  compressing uncompressed pixel data using a given encoding format as specified
  by a UID. Only *RLE Lossless* is currently supported (:pr:`1372`)
* Added :mod:`~pydicom.encoders` module and the following encoders:

  * :attr:`~pydicom.encoders.RLELosslessEncoder` with 'pydicom', 'pylibjpeg'
    and 'gdcm' plugins
* Added `read` parameter to :func:`~pydicom.data.get_testdata_file`
  to allow reading and returning the corresponding dataset (:pr:`1372`)
* Handle decoded RLE segments with padding (:issue:`1438`)
* Add option to JSON functions to suppress exception and continue (:pr:`1332`)
* Allow searching :class:`~pydicom.fileset.FileSet` s for a list of elements \ 
(:pr:`1428`)
* Added hash function to SR :class:`~pydicom.sr.Code` (:pr:`1434`)

Fixes
-----
* Fixed pickling a :class:`~pydicom.dataset.Dataset` instance with sequences
  after the sequence had been read (:issue:`1278`)
* Fixed JSON export of numeric values
* Fixed handling of sequences of unknown length that switch to implicit
  encoding, and sequences with VR **UN** (:issue:`1312`)
* Do not load external data sources until needed - fixes problems with
  standard workflow if `setuptools` are not installed (:issue:`1341`)
* Fixed empty **PN** elements read from file being :class:`str` rather than
  :class:`~pydicom.valuerep.PersonName` (:issue:`1338`)
* Fixed handling of JPEG (10918-1) images compressed using RGB colourspace
  rather than YBR with the Pillow pixel data handler (:pr:`878`)
* Allow to deepcopy a `~pydicom.dataset.FileDataset` object (:issue:`1147`)
* Fixed elements with a VR of **OL**, **OD** and **OV** not being set correctly
  when an encoded backslash was part of the element value (:issue:`1412`)
* Fixed expansion of linear segments with floating point steps in
  segmented LUTs (:issue:`1415`)
* Fixed handling of code extensions with person name component delimiter
  (:pr:`1449`)
* Fixed bug decoding RBG jpg with APP14 marker due to change in Pillow (:pr:`1444`)
* Fixed decoding for `FloatPixelData` and `DoubleFloatPixelData` via
  `pydicom.pixel_data_handlers.numpy_handler` (:issue:`1457`)

Log message:
py-pydicom: Update to 1.3.0

From Eric A. Borisch in pull request NetBSD/pkgsrc#52.