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CVS Commit History:
2025-01-20 18:29:59 by Jason Bacon | Files touched by this commit (17) |
Log message:
biology/subread: Alignment, quantification, SNPs
The Subread package comprises a suite of software programs for
processing next-gen sequencing read data including:
Subread: a general-purpose read aligner which can align both
genomic DNA-seq and RNA-seq reads. It can also be used to
discover genomic mutations including short indels and structural
variants.
Subjunc: a read aligner developed for aligning RNA-seq reads
and for the detection of exon-exon junctions. Gene fusion events
can be detected as well.
featureCounts: a software program developed for counting
reads to genomic features such as genes, exons, promoters and
genomic bins.
Sublong: a long-read aligner that is designed based on
seed-and-vote.
exactSNP: a SNP caller that discovers SNPs by testing signals
against local background noises.
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