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(this page)| 2024-04-11 16:49:41 by Jason Bacon | Files touched by this commit (1) |
Log message: biology/atac-seq: Update to 1.5.0 Remove multiqc dep, responsible for 117 dependencies, including gcc, llvm, and rust. |
| 2024-01-10 17:10:17 by Jason Bacon | Files touched by this commit (2) |
Log message: biology/atac-seq: Update to 1.4 Add biology/py-macs3 dep to metapackage |
| 2023-12-23 17:23:22 by Jason Bacon | Files touched by this commit (1) |
Log message: biology/atac-seq: Adjust python versions to match py-macs2 Add sra-tools and a few commonly used archivers to metapkg |
| 2023-11-06 00:48:31 by Thomas Klausner | Files touched by this commit (3) |
Log message: py-macs2: not for Python 3.12 |
| 2023-08-14 07:25:36 by Thomas Klausner | Files touched by this commit (1247) |
Log message: *: recursive bump for Python 3.11 as new default |
| 2023-07-28 18:45:50 by Jason Bacon | Files touched by this commit (1) |
Log message: biology/atac-seq: Add curl to metaport deps Standardizing on a download tool simplifies pipelines |
| 2023-07-22 15:30:15 by Jason Bacon | Files touched by this commit (1) |
Log message: biology/atac-seq: Update to 1.2 Add py-multiqc to metapackage |
2023-07-01 10:37:47 by Thomas Klausner | Files touched by this commit (105) |  |
Log message: *: restrict py-numpy users to 3.9+ in preparation for update |
| 2023-01-29 01:33:04 by Thomas Klausner | Files touched by this commit (2) |
Log message: py-macs2: does not support python 2.x |
| 2023-01-23 22:38:51 by Jason Bacon | Files touched by this commit (2) |
Log message: biology/atac-seq: Core tools needed for ATAC-Seq analysis The atac-seq meta-package provides the core tools needed for performing a typical ATAC-Seq differential accessibility analysis, including adapter trimming, quality control, alignment, peak calling, and identification of differentially accessible peaks. Researchers may want additional tools for data manipulation, gene ontology, etc. |
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