2025-02-13 14:50:00 by Adam Ciarcinski | Files touched by this commit (2) |  |
Log message:
py-xopen: updated to 2.0.2
v2.0.2 (2024-06-12)
* Fix a bug that was triggered when reading large compressed files with an \
external program.
v2.0.1 (2024-03-28)
* Fixed a bug where reading from stdin and other pipes would discard the first \
bytes from the input.
* Zstd files compressed with the --long=31 files can now be opened without \
throwing errors.
v2.0.0 (2024-03-26)
* Support for gzip levels has been made more consistent. Levels 0-9 are \
supported. Level 11 which was only available when the pigz backend was present \
is not supported anymore. Level 0, gzip format without compression, lead to \
crashes when the gzip application backend was used as this does not have a -0 \
flag. xopen() now defers to other backends in that case.
* xopen() now accepts file-like objects for its filename argument.
* Various refactors for better code size and readability:
PipedCompressionReader/Writer are now combined _PipedCompressionProgram class.
_PipedCompressionProgram is binary-only. For text reading and writing it is \
wrapped in an io.TextIOWrapper in the xopen() function.
Classes that derive from PipedCompressionReader/Writer have been removed.
* xopen's classes, variables and functions pertaining to piped reading and \
writing are all made private by prefixing them with an underscore. These are not \
part of the API and may change between releases.
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2024-11-11 08:29:31 by Thomas Klausner | Files touched by this commit (862) |
Log message:
py-*: remove unused tool dependency
py-setuptools includes the py-wheel functionality nowadays
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2024-04-11 01:51:06 by Jason Bacon | Files touched by this commit (1) |
Log message:
devel/py-xopen: Release to pkgsrc-users@
xopen is used only by cutadapt, which has been replaced by
fastq-trim in my toolbox
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2024-02-10 14:04:23 by Jason Bacon | Files touched by this commit (4) |
Log message:
devel/py-xopen: Update to 1.9.0nb1
Add zstandard support
Simple matter of installing py-zstandard as a runtime dependency
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2024-01-31 12:53:35 by Adam Ciarcinski | Files touched by this commit (2) |  |
Log message:
py-xopen: updated to 1.9.0
v1.9.0
* The python-isal compression backend is now only used for compression
levels 1 and 2. Contrary to other backends, python-isal level 0 gave
compressed rather than uncompressed data in gzip format. Level 3 on
python-isal did not provide better compression than level 2.
* PipedCompressionReader/Writer now derive from the `io.IOBase
<https://docs.python.org/3/library/io.html#io.IOBase>`_ abstract class.
* The gzip default compression level is now 1 when no value is provided
by the calling function. The default used to be determined by the backend.
* xopen now uses zlib-ng when available and applicable.
* Piped ``igzip`` is no longer used as a (de)compression backend as
python-isal's threaded mode is a better choice in all use cases.
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2023-10-28 21:57:26 by Thomas Klausner | Files touched by this commit (516) |  |
Log message:
python/wheel.mk: simplify a lot, and switch to 'installer' for installation
This follows the recommended bootstrap method (flit_core, build, installer).
However, installer installs different files than pip, so update PLISTs
for all packages using wheel.mk and bump their PKGREVISIONs.
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2023-10-21 19:51:45 by Adam Ciarcinski | Files touched by this commit (3) |  |
Log message:
py-xopen: updated to 1.8.0
v1.8.0 (2023-11-03)
xopen now defers to the isal.igzip_threaded module rather than piping to \
external programs in applicable cases. This makes reading and writing to gzip \
files using threads more efficient.
Support for Python 3.7 is dropped and support for Python 3.12 is added.
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2023-06-06 14:42:56 by Taylor R Campbell | Files touched by this commit (1319) |
Log message:
Mass-change BUILD_DEPENDS to TOOL_DEPENDS outside mk/.
Almost all uses, if not all of them, are wrong, according to the
semantics of BUILD_DEPENDS (packages built for target available for
use _by_ tools at build-time) and TOOL_DEPEPNDS (packages built for
host available for use _as_ tools at build-time).
No change to BUILD_DEPENDS as used correctly inside buildlink3.
As proposed on tech-pkg:
https://mail-index.netbsd.org/tech-pkg/2023/06/03/msg027632.html
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2022-11-08 12:36:20 by Adam Ciarcinski | Files touched by this commit (2) |  |
Log message:
py-xopen: updated to 1.7.0
1.7.0:
Unknown changes
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2022-08-11 08:29:32 by Adam Ciarcinski | Files touched by this commit (3) |  |
Log message:
py-xopen: updated to 1.6.0
v1.6.0 (2022-08-10)
When writing gzip files, the timestamp and name of the original file is omitted \
(equivalent to using gzip --no-name (or -n) on the command line). This allows \
files to be written in a reproducible manner.
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