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(this page)| 2016-07-09 08:39:18 by Thomas Klausner | Files touched by this commit (1068) |
Log message: Bump PKGREVISION for perl-5.24.0 for everything mentioning perl. |
| 2016-04-09 15:34:16 by Wen Heping | Files touched by this commit (2) |
Log message: Update to 1.3.8.1 No upstream changelog. |
| 2015-11-04 00:33:46 by Alistair G. Crooks | Files touched by this commit (262) |
Log message: Add SHA512 digests for distfiles for math category Problems found locating distfiles: Package dfftpack: missing distfile dfftpack-20001209.tar.gz Package eispack: missing distfile eispack-20001130.tar.gz Package fftpack: missing distfile fftpack-20001130.tar.gz Package linpack: missing distfile linpack-20010510.tar.gz Package minpack: missing distfile minpack-20001130.tar.gz Package odepack: missing distfile odepack-20001130.tar.gz Package py-networkx: missing distfile networkx-1.10.tar.gz Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz Package quadpack: missing distfile quadpack-20001130.tar.gz Otherwise, existing SHA1 digests verified and found to be the same on the machine holding the existing distfiles (morden). All existing SHA1 digests retained for now as an audit trail. |
| 2015-06-12 12:52:19 by Thomas Klausner | Files touched by this commit (3152) |
Log message: Recursive PKGREVISION bump for all packages mentioning 'perl', having a PKGNAME of p5-*, or depending such a package, for perl-5.22.0. |
| 2014-05-30 01:38:20 by Thomas Klausner | Files touched by this commit (3049) |
Log message: Bump for perl-5.20.0. Do it for all packages that * mention perl, or * have a directory name starting with p5-*, or * depend on a package starting with p5- like last time, for 5.18, where this didn't lead to complaints. Let me know if you have any this time. |
| 2013-05-31 14:42:58 by Thomas Klausner | Files touched by this commit (2880) |
Log message: Bump all packages for perl-5.18, that a) refer 'perl' in their Makefile, or b) have a directory name of p5-*, or c) have any dependency on any p5-* package Like last time, where this caused no complaints. |
| 2013-01-24 03:24:15 by Wen Heping | Files touched by this commit (2) |
Log message: Update to 1.3.8 Update LICENSE Upstream changes: genetics 1.3.8 - 2012-12-14 --------------------------- Bug fixes: - Regenerate broken PDF files in inst/doc. genetics 1.3.7 - 2012-09-14 --------------------------- Enhancements: - Improve descripiton of last examples in manual page for HWE.test(). Other Changes: - Correct warnings issued by recent versions of R CMD CHECK. |
2012-04-15 18:54:17 by Brook Milligan | Files touched by this commit (2) |  |
Log message: Updated to genetics v1.3.6, added LICENSE (commented) and updated MAINTAINER. |
| 2008-10-14 09:38:26 by Mark Davies | Files touched by this commit (2) |
Log message: Update R-genetics to 1.3.4 genetics 1.3.4 - 2008-08-20 --------------------------- - Fix bug in makeGenotypes that caused it to ignore the 'sep' argument when determining which columns contain genotypes & add a corresponing regression test genetics 1.3.3 - 2007-04-29 --------------------------- - Correct 'obsolete' use of '$'. R no longer permits '$' to be used to extract named elements from vectors (just lists). - Remove the power.casectl() function, which was based on invalid assumpations. It has been marked depreciated. Please use the functions in the Bioconductor package 'GeneticsDesign' instead. genetics 1.3.2 - 2007-11-20 --------------------------- - Fix bug in handling of assignment of NA value(s) to elements of an existing genotype object. - Fix warning messages from R CMD CHECK - Correct documentation error by swapping definitions of kp and alpha arguments of power.casectl(). genetics 1.3.1 -------------- - fixes in genotypeOrder to ensure all genotype/haplotype combinations are used. - genotypeOrder<- is now exported genetics 1.3.0 -------------- - A note is now displayed on startup: The R-Genetics project has developed an set of enhanced genetics packages that will shortly replace 'genetics'. Please visit the project homepage at http://rgenetics.org for more information. - binsearch() has been moved to the gtools package - New function groupGenotype to create groups/levels based on genotype names - Added some internal utility functions (.genotype2Haplotype, .genotype2Allele, and .matchGenotype) - Genotype class gets additional slot genotypeOrder (and genotype() function gets additional argument with the same name) in order to enable predefined order of genotypes in other functions e.g. summary - Added order, sort and %in% methods for genotype and haplotype classes. - Fixed genotype() with allow.partial.missing=FALSE when 'alleles' argument is passed - There is no more warning in genotype() if 'a1' or 'a2' have NA value(s) and 'alleles'' argument is specified, since NA is NA anyway - Fixed documentation of power.casectrl() - added gtools to Depends as needed by expectedGenotypes(); the latter now gives sorted genotypes according to order of given alleles - print.HWE.test() wasn't displaying the observed vs expected genotype frequency table. Fixed. genetics 1.2.1 -------------- - Update Greg's email address - Fixed a bug in function allele.number, as pointed out by Chris Wallace |
| 2007-10-25 18:59:59 by Johnny C. Lam | Files touched by this commit (980) |
Log message: Remove empty PLISTs from pkgsrc since revision 1.33 of plist/plist.mk can handle packages having no PLIST files. |
New packages: