Subject: CVS commit: pkgsrc/biology/hmmer
From: Min Sik Kim
Date: 2004-12-01 05:01:09
Message id: 20041201040109.212B12DA1D@cvs.netbsd.org

Log Message:
Update hmmer to 2.3.2.  Patch provided by David Price in PR pkg/28483.
While here, enable pkgviews installation.

Changes:
-:- hmmsearch intermittently failed on Swissprot searches, on some
    platforms (reports on AMD/Linux; Mac OS/X). (#h25)
-:- hmmpfam memory allocation strategy did not guarantee RAMLIMIT,
    and could explode to very large allocations when searching
    with large sequences. (#h26)
-:- technical improvements in handing dsq's (digitized sequences);
    "bug" has no visible effects, except when compiling on
    different platforms. (#h27)
-:- typo fix in P7Forward() recursion; typo may have had minor
    effect on calculated scores. (#h28)
-:- hmmalign now includes --outformat and --oneline option for
    specifying different output alignment formats than the default
    Stockholm.

Files:
RevisionActionfile
1.6modifypkgsrc/biology/hmmer/Makefile
1.4modifypkgsrc/biology/hmmer/distinfo