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Subject: CVS commit: pkgsrc/biology/gnome-chemistry-utils
From: Ryo ONODERA
Date: 2020-06-29 15:04:48
Message id: 20200629130448.C30C2FB28@cvs.NetBSD.org
Log Message:
gnome-chemistry-utils: Update to 0.14.16
Changelog:
Version 0.14.16:
GChemPaint:
* Do not show buttons for non yet implemented tools.
Version 0.14.15:
GCCV library:
* Don't use the abs() function on unsigned numbers.
Other:
* Updated appdata files.
Version 0.14.14:
Mozilla plugin:
* Fix build.
Version 0.14.13:
GChemPaint:
* Optional use of Lasem to display maths.
* Fix rendering with gtk+ >= 3.20.
* Fix crash with atom charges larger than 1.
* Fix crash when deleting a bond outside a molecule. [#48256]
Gnumeric plugin:
* Add monoisotopicmass function in gnumeric and more.
Databases:
* Update names for elements 113, 115, 117 and 118.
Version 0.14.12:
GChemPaint:
* Enhanced Chemdraw formats support. [sr #108952]
* Optional use of Lasem to display maths.
* Fix rendering with gtk+ >= 3.20.
GChemCalc:
* Don't crash on "Ac" string. [#47366]
Version 0.14.11:
GChemPaint:
* Fix an infinite loop condition in retrosyntheses alignment.
* Don't crash when importing an invalid string. [Redhat bug #1285154]
* Fix drawing when zoomed.
* Fix various runtime errors.
* Fix crash when creating a reaction with no product.
* Enhanced Chemdraw formats support.
* Fix embedding of a whole molecule inside brackets. [#47224]
GChemTable:
* Don't crash when showing an already existing chart.
[Redhat bug #1302135]
GCrystal:
* Fix build with gcc-6. [Redhat bug #1307546]
GCrystal and GChem3D:
* Don't crash when rendering to memory (images and print). [#47169]
Other:
* Added keywords to desktop files.
* Updated appdata files.
Version 0.14.10:
GChemPaint:
* Fix an object bounds issue.
Mozilla plugin:
* Supports the npapi-sdk package as requirement.
Other:
* Fixed typos in appdata files.
Version 0.14.9:
GChemPaint:
* Ensure that the document size is always updated. [#43091]
3d viewer and GCrystal:
* Fix rotation. [#42977] (patch from Toni Andjelkovic)
All applications:
* Add appdata files.
Version 0.14.8
GChemPaint:
* Fix drawing with Gtk+ >= 3.10.
Version 0.14.7
GCrystal:
* Fix crash in dialogs with recent Gtk+.
Mozilla plugin:
* Fix crashers for 2D and 3D molecules.
Version 0.14.6
3d viewer:
* Avoid empty entries in recent list.
CGchemPaint:
* Restore .mol files support.
* Fix CML import (also affected 3d viewer and >GCrystal).
* Fix BMP export.
GCrystal:
* Fix test order in lines code. [#41261]
GSpectrum:
* Fix access to uninitialized data.
* Don' double free a string.
GOffice component:
* Don't crash when editing after saving a GChemPaint object.
Mozilla plugin:
* Fix supported mime-types list. (see Debian bug #716961)
Other:
* Fix build on FreeBSD (Koop Mast). [#41256]
Version 0.14.5
GChemPaint:
* Make adding template work again.
Version 0.14.4
GChemPaint:
* Do not use a NULL atom properties. [#40194]
Version 0.14.3
GChemPaint:
* Really close the window on delete event.
* Don't crash when aligning ungrouped objects.
GChemTable:
* Fix crash when using masses in a graph.
* Fix graph behavior after edition.
All:
* Make sure to not create a C++ locale from a NULL string.
Version 0.14.2
GChemPaint:
* Fix crash when loading some molecules (was introduced in 0.14.1).
Version 0.14.1
GChemPaint:
* Do not allow a mesomery destruction when inside a reaction.
* Fix molecule deletion inside a mesomery.
* Fix reactant deletion inside a reaction.
* Don't crash when a mesomery inside a reaction is destroyed.
* Check molecule consistency when loading, avoids a stack overflow.
* Enhanced representaion of chiral molecules imported from CML and other
formats.
* Fix crash when deleting a cyclic bond.
GCrystal:
* Fix row selection operations order in grids.
Version 0.14.0
GChemPaint:
* Fix reaction construction.
* Fix non bonding electron pairs.
Version 0.13.99
GChemPaint:
* Fix squiggle bonds period.
* Allow brackets around a mesomery.
* Allow a mesomery inside a reaction.
* Fixed some meomory access issues.
* Fixed crash when loading a group.
* Fixed mesomery construction.
* Fixed crash when ungrouping.
Version 0.13.98
GChemPaint:
* Don't freeze after an aborted molecules merge.
* Initialize the bond order for the Newman projection tool.
* Don't crash when adding brackets around a fragment.
* Fix undoing a molecule partial flip.
* Fix bracket stoichiometry index position after a transform.
* Fix explicit lone pairs count evaluation.
Version 0.13.92
GChemCalc
* Updated the documentation.
GChemPaint:
* Fix View::BuildSVG() and View::BuildEPS() which were missing the
trailing 0.
* Fix misleading error message while saving.
* Fix loading of arrows inside a group. [#27032]
GCrystal:
* Apply element change to all slected atoms.
* Updated the documentation.
GSpectrum:
* Add "Response factor" as supported unit.
* Fixed widgets spacing.
* Updated the documentation.
GChemTable:
* Updated the documentation.
Version 0.13.91
3d viewer:
* Show all menu items when a molecule is loaded from the command line.
* Updated user documentation.
GChemPaint:
* Don't crash on startup.
All:
* Fix localization issues.
* Fixed modal message boxes behavior.
Version 0.13.90
3d viewer:
* Fix import from pdb files. [#36582]
GCrystal:
* Fix infinite loop condition. [#36583]
* Fix atomic radius change issue.
GChemTable:
* Fix languages translation.
Version 0.13.7
GChemPaint:
* Fixed crash when selecting the alignment item inside a mechanism
step. [#35626]
GCrystal:
* Fixed loading CIF files using uptodate space groups descriptions.
Other:
* License is now GPL version 3 (except for the OpenBabel related code).
* Fix build on big endian machines (Dan Horak). [#36175]
* Updated API documentation.
Version 0.13.6
GChemPaint:
* fixed text position serialization. [#34947]
* add some support for Newman projections.
* accept some multisteps reactions.
Goffice component:
* Add support for 3D molecular structures.
Other:
* Fixed pixmaps installation directory. [#35272]
* fixed build with ->l,--no-undefined. [patch #7677]
Version 0.13.5
3d viewer:
* Import from InChI or SMILES.
* Export to GChemPaint and GChemCalc.
* Generates InChI, InChiKey and SMILES.
* Add access to databases.
GChemPaint:
* Brackets inside a molecule accept a stoichiometry coefficient.
GCrystal:
* Use multiple selection in atoms and lines dialogs.
GSpectrum:
* Allow markup in combo boxes and axes titles.
Goffice component:
* Add support for crystal structures.
Other:
* Fixed one more OpenGL related crasher.
Version 0.13.4
All:
* Ported to Gtk+-3.0.
GCrystal:
* Use the new GcrGrid item in atoms, lines and cleavages dialogs.
* Make these and size dialogs instant apply.
GChemTable:
* Use a more complete tip window for elements.
Version 0.13.3
GChemPaint:
* Fixed build with gcc-4.6. [#32363]
* Allow colored atomic symbols on a per-document basis.
* Brackets tool now working, not perfectly though.
Other:
* Don't use POLLRDHUP when not defined. [#32768]
* Split libgcu so that libgcu itself never calls gtk+ directly.
Version 0.13.2
GChemPaint:
* Do not allow document changes using keyboard while
dragging the mouse. [#31812]
* Don't add new molecules when undoing a mechanism arrow deletion.
[#32433]
* Removed the Wikipedia tool which was obsolete.
* Reorganized molecule contextual menu with new 3D options
and databases access.
Other:
* OpenBabel support has been moved to a separate process and greatly
enhanced, specially for 3D export from gchempaint.
* A lot of bugs have been fixed.
Version 0.13.1
GSpectrum:
* Loads NUTS files.
* Transforms FID to spectrum.
Version 0.13.0
GChemPaint:
* New "lasso" tool to allow partial selections.
* New "brackets" tool (doesn't work yet).
Other:
* libgcr: new library for GCrystal.
* Fixed all bugs discovered in the 0.12 banch.
Files: