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Subject: CVS commit: pkgsrc/biology/py-cutadapt
From: Adam Ciarcinski
Date: 2022-01-17 10:03:10
Message id: 20220117090310.4AD61FB24@cvs.NetBSD.org
Log Message:
py-cutadapt: updated to 3.5
v3.5 (2021-09-29)
-----------------
* :issue:`555`: Add support for dumping statistics in JSON format using ``--json``.
* :issue:`541`: Add a "Read fate breakdown" section heading to the \
report, and also
add statistics for reads discarded because of ``--discard-untrimmed`` and
``--discard-trimmed``. With this, the numbers in that section should add up to \
100%.
* Add option ``-Q``, which allows to specify a quality-trimming threshold for R2 \
that is
different from the one for R1.
* :issue:`567`: Add ``noindels`` adapter-trimming parameter. You can now write
``-a "ADAPTER;noindels"`` to disallow indels for a single adapter only.
* :issue:`570`: Fix ``--pair-adapters`` not finding some pairs when reads contain
more than one adapter.
* :issue:`524`: Fix a memory leak when using ``--info-file`` with multiple cores.
* :issue:`559`: Fix adjacent base statistics not being shown for linked adapters.
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