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Subject: CVS commit: pkgsrc/math/R-broom
From: Makoto Fujiwara
Date: 2022-12-18 11:26:18
Message id: 20221218102618.58BB3FA90@cvs.NetBSD.org
Log Message:
(math/R-broom) Updated 0.8.0 to 1.0.2
# broom 1.0.2
* The default `data` argument for `augment.coxph()` and
`augment.survreg()` has been transitioned from `NULL` to
`model.frame(x)` (#1126 by `@capnrefsmmat`).
* Migrated 'ggplot2' from strong to weak dependency, i.e. moved from
`Imports` to `Suggests`.
* Fixed a bug where `augment()` results would not include residuals
when the response term included a function call (#1121, #946, #937,
#124).
# broom 1.0.1
* Improves performance of `tidy.lm()` and `tidy.glm()` for full-rank
fits (#1112 by `@capnrefsmmat`).
* Moves forward with deprecation of tidiers for sparse matrices
outputted from the Matrix package, initially soft-deprecated in
broom 0.5.0. The Matrix tidiers were light wrappers around coercion
methods that will now be deprecated from Matrix itself in the
upcoming 1.4-2 release. The affected methods are
`tidy.sparseMatrix()`, `tidy.dgCMatrix()`, and
`tidy.dgTMatrix()`. Note that `tidy.confusionMatrix()`, for relevant
objects outputted from the caret package, is unaffected (#1113).
* `tidy.anova()` works again with `anova` objects from the `lme4`
package (broken by addition of the `terms` column in the previous
release)
# broom 1.0.0
broom 1.0.0 is the first "production" release of the broom package,
and includes a number of notable changes to both functionality and
governance.
As of this release, the broom team will be following a set of
guidelines that clarify the scope of further development on the
package. Given the package's wide use and long history, these
guidelines _prioritize backward compatibility_ over internal
consistency and completeness. You can read those guidelines
[here](https://broom.tidymodels.org/articles/)!
We've also made notable changes to error handling in this release:
* Adds minimal ellipsis checking to warn on commonly misspecified
arguments passed through ellipses. Notably:
+ `tidy()` methods will now warn when supplied an `exponentiate`
argument if it will be ignored.
+ `augment()` methods will now warn when supplied a `newdata`
argument if it will be ignored.
* The warning regarding tidiers only maintained via dispatch to `lm`
and `glm` is now displayed only once per session, per unique
dispatch. That is, if a `class_a` object is tidied using a `(g)lm`
method, broom will not warn when tidying `class_a` objects for the
rest of the session, but if a `class_b` object is tidied using a
`(g)lm` method in the same session, broom will warn again (#1101).
Other fixes and improvements:
* Add `exponentiate` argument to `tidy.boot()` (#1039).
* Update in `tidy.htest()` converting matrix-columns to vector-columns (#1081).
* Address failures in `tidy.glht()` with `conf.int = TRUE` (#1103).
* Address failures in `tidy.zoo()` when input data does not have `colnames`
(#1080).
* Transition tidiers for bivariate linear or spline-based interpolation---using
list tidiers to interface with objects from the akima package is now
considered off-label. See the interp package for a FOSS alternative.
* Address failures in `tidy.svyolr()` when `p.values = TRUE`. Instead of aliasing
`tidy.polr()` directly, `tidy.svyolr()` lightly wraps that method and
warns if `p.values` is supplied (#1107).
* Adds a `term` column and introduces support for `car::lht()` output in
`tidy.anova()` (#1106 by `@grantmcdermott`).
* Adds a dedicated `glance.anova` method (which previously dispatched to the
deprecated `glance.data.frame()` tidier, #1106 by `@grantmcdermott`).
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