Subject: CVS commit: pkgsrc/biology/rna-star
From: Jason Bacon
Date: 2023-07-31 16:34:18
Message id: 20230731143418.C2133FBDB@cvs.NetBSD.org

Log Message:
biology/rna-star: Spliced Transcripts Align to a Ref

STAR (Spliced Transcripts Alignment to a Reference) aims to achieve
accurate alignment of high-throughput RNA-seq data.  STAR is based on
a previously undescribed RNA-seq alignment algorithm that uses
sequential maximum mappable seed search in uncompressed suffix arrays
followed by seed clustering and stitching procedure. STAR outperforms
other aligners by a factor of >50 in mapping speed, aligning to the
human genome 550 million 2 x 76 bp paired-end reads per hour on a modest
12-core server, while at the same time improving alignment sensitivity
and precision.

Files:
RevisionActionfile
1.1addpkgsrc/biology/rna-star/DESCR
1.1addpkgsrc/biology/rna-star/Makefile
1.1addpkgsrc/biology/rna-star/PLIST
1.1addpkgsrc/biology/rna-star/distinfo
1.1addpkgsrc/biology/rna-star/patches/patch-Makefile
1.1addpkgsrc/biology/rna-star/patches/patch-SharedMemory.cpp
1.1addpkgsrc/biology/rna-star/patches/patch-SoloBarcode.cpp
1.1addpkgsrc/biology/rna-star/patches/patch-SuffixArrayFuns.cpp
1.1addpkgsrc/biology/rna-star/patches/patch-bamSortByCoordinate.cpp