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Subject: CVS commit: pkgsrc/biology/rna-star
From: Jason Bacon
Date: 2023-07-31 16:34:18
Message id: 20230731143418.C2133FBDB@cvs.NetBSD.org
Log Message:
biology/rna-star: Spliced Transcripts Align to a Ref
STAR (Spliced Transcripts Alignment to a Reference) aims to achieve
accurate alignment of high-throughput RNA-seq data. STAR is based on
a previously undescribed RNA-seq alignment algorithm that uses
sequential maximum mappable seed search in uncompressed suffix arrays
followed by seed clustering and stitching procedure. STAR outperforms
other aligners by a factor of >50 in mapping speed, aligning to the
human genome 550 million 2 x 76 bp paired-end reads per hour on a modest
12-core server, while at the same time improving alignment sensitivity
and precision.
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