Subject: CVS commit: pkgsrc/math/py-scipy
From: Adam Ciarcinski
Date: 2024-06-12 10:57:43
Message id: 20240612085743.42A2EFC74@cvs.NetBSD.org

Log Message:
py-scipy: updated to 1.13.1

Issues closed for 1.13.1

BUG: \`scipy.ndimage.value_indices\` returns empty dict for \`intc\`/\`uintc\` \ 
dtype on Windows
DOC, MAINT: .jupyterlite.doit.db shows up untracked
DOC: optimize.root(method='lm') option
BUG: csr_array can no longer be initialized with 1D array
BUG: \`TestEig.test_falker\` fails on windows + MKL as well as...
BUG: Cannot find \`OpenBLAS\` on Cygwin
BUG: special.spherical_in: derivative at \`z=0, n=1\` incorrect
BUG: \`eigh\` fails for size 1 array with driver=evd
BUG: warning from \`optimize.least_squares\` for astropy with...
BUG: spatial: error in \`Rotation.align_vectors()\` with an infinite...
MAINT, TST: two types of failures observed on maintenance/1.13.x...
BUG: scipy.special.factorial2 doesn't handle \`uint32\` dtypes
BUG: scipy.stats.wilcoxon in 1.13 fails on 2D array with nan...
BUG: scipy.spatial.Delaunay, scipy.interpolate.LinearNDInterpolator...
BUG: stats.yulesimon: incorrect kurtosis values
BUG: incorrect origin tuple handling in ndimage \`minimum_filter\`...
BUG: spatial: \`Rotation.align_vectors()\` incorrect for anti-parallel...
BUG: sparse matrix creation in 1.13 with indices not summing...
BUG: stats.zipf: incorrect pmf values
CI: scipy installation failing in umfpack tests

Pull requests for 1.13.1

MAINT: added doc/source/.jupyterlite.doit.db to .gitignore See...
BUG: sparse: align dok_array.pop() to dict.pop() for case with...
BUG: sync pocketfft again
REL, MAINT: prep for 1.13.1
DOC: optimize: fix wrong optional argument name in \`root(method="lm")\`.
DOC: add missing deprecations from 1.13.0 release notes
MAINT/DOC: fix syntax in 1.13.0 release notes
BUG: sparse: Clean up 1D input handling to sparse array/matrix...
DOC: remove spurious backtick from release notes
BUG: linalg: fix ordering of complex conj gen eigenvalues
TST: tolerance bumps for the conda-forge builds
TST: compare absolute values of U and VT in pydata-sparse SVD...
BUG: Include Python.h before system headers.
BUG: linalg: fix eigh(1x1 array, driver='evd') f2py check
BUG: \`spherical_in\` for \`n=0\` and \`z=0\`
BLD: Fix error message for f2py generation fail
TST: Adapt to \`__array__(copy=True)\`
BLD: Move Python-including files to start of source.
REV: 1.13.x: revert changes to f2py and tempita handling in meson.build...
update openblas to 0.3.27
BUG: Fix error with 180 degree rotation in Rotation.align_vectors()...
MAINT: optimize.linprog: fix bug when integrality is a list of...
MAINT: stats.wilcoxon: fix failure with multidimensional \`x\`...
MAINT: lint: temporarily disable UP031
BUG: handle uint arrays in factorial{,2,k}
BUG: prevent QHull message stream being closed twice
MAINT/DEV: lint: disable UP032
BUG: fix Vor/Delaunay segfaults
BUG: ndimage.value_indices: deal with unfixed types
BUG: ndimage: fix origin handling for \`{minimum, maximum}_filter\`
MAINT: stats.yulesimon: fix kurtosis
BUG: sparse: Fix summing duplicates for CSR/CSC creation from...
BUG: stats: Fix \`zipf.pmf\` and \`zipfian.pmf\` for int32 \`k\`
CI: pin Python for MacOS conda

Files:
RevisionActionfile
1.82modifypkgsrc/math/py-scipy/Makefile
1.52modifypkgsrc/math/py-scipy/distinfo