Path to this page:
Subject: CVS commit: pkgsrc/math/R-VGAM
From: Makoto Fujiwara
Date: 2024-10-27 00:06:30
Message id: 20241026220631.117C3FC7E@cvs.NetBSD.org
Log Message:
(math/R-VGAM) Updated 1.1.9 to 1.1.12, kind of commit log correction, sorry
CHANGES IN VGAM VERSION 1.1-12
NEW FEATURES
o hdeffsev2() and DDfun() are new.
o Some link functions handle up to deriv = 9: e.g.,
loglink(), logitlink().
o Tested okay on R 4.4.1.
BUG FIXES and CHANGES
o Passes stricter CHECKing, esp. with Rd
\link{} targets that were missing package anchors.
And R_Calloc() and R_Free() used.
o More \dontrun{} added to .Rd files, to quicken
the checking.
o Several functions associated with the Laplace
distribution moved to VGAMdata.
o VGAM now depends on R >= 4.1.0 which was released
3 years ago.
CHANGES IN VGAM VERSION 1.1-11
NEW FEATURES
o AIC() and BIC() methods function for "drrvglm" objects.
o simulate() works with multinomial(), cumulative(),
and other categorical family functions.
o New family functions: N1binomial(dr), N1poisson(dr).
o Helper functions: is.Identity(), unmaskA(), is.non0().
o Tested okay on R 4.4.0.
BUG FIXES and CHANGES
o "rrvglm" and "drrvglm" objects now fitted under
a common framework and algorithm.
o summary(vglmObject) no longer prints the
Pearson residuals by default. Some other output may
be suppressed if they are printed.
o Some argument shuffling in binormalcop().
Argument 'stdze' means the mean and sd parameters
may be estimated.
o Some argument shuffling in rrvglm.control(). Also,
the following arguments are no longer supported:
'Wmat', 'Norrr'", 'Svd.arg', 'Uncorrelated.latvar',
'Alpha', 'scaleA'.
Also, 'Crow1positive = NULL' for no effect.
o summary.rrvglm(h.step = 0.005) and
summary.drrvglm(h.step = 0.005) are now defaults.
o More checking of links performed if vfl = TRUE.
o gaitdnbinomial() now assigns earg[[2]] (needed
for rootogram4()).
o Coef(drrvglmObject)@A and summary(drrvglmObject) now agree.
o The handling of vglm(na.action) is more similar to lm() and
glm(). Ditto for vgam().
CHANGES IN VGAM VERSION 1.1-10
NEW FEATURES
o Doubly-constrained RRVGLMs are partially implemented.
They have class "drrvglm". More checking
is needed to iron out all problems.
o plotvgam(..., main = letters[1:3]) will work by
having 3 different 'main's.
o chisq() has 'squared' for the chi distribution.
o New family functions: extbetabinomial(dpqr),
gensh(dpqr).
o New functions: asinlink(), sqrtlink(), alogitlink(),
sloglink(), lcalogitlink(), lcsloglink(), cloglink(),
log1plink().
o Argument 'ynames = FALSE' added to multinomial(),
acat(), [cs]ratio(), propodds() and cumulative(),
which can make the output more readable. Thanks to
Daniel Smith for the suggestion.
o New functions: CM.symm[01](), CM.equid(), CM.free(),
CM.ones(), CM.qnorm().
o negbinomial(vfl = FALSE) has been added.
o Tested okay on R 4.3.2.
BUG FIXES and CHANGES
o acat(), cumulative(), cratio(), propodds(), sratio() handles
argument 'Thresh' which can be assigned 'symm1', 'symm0',
'free', 'qnorm', etc.
o All remnants of is.R() removed, for R 4.4.0.
o Some fortran code now avoids some warnings found by
a Debian C compiler.
o dgaitdplot() stop()s when the parameters are
outside the parameter space.
o demo() examples have been updated to run fully.
o "rrvglm" objects have new slots "A.est" and \
"C.est"
which simplifies the code.
o "rrvglm" objects are estimated using the "alternating"
'Algorithm' only, and the "derivative" method withdrawn.
o For RR-VGLMs and DRR-VGLMs, 'kill.all' changed to 'omit123'.
o rrvglm.control() has some of parameters changed
(for more stringent convergence).
o Some argument shuffling: genpoisson[12](). That is,
the order has been changed.
o summary.rrvglm() swapping of pasting block matrices
according to 'fixA' was wrong.
o replace.constraints() renamed to replaceCMs().
o dtruncpareto1() no longer returns 0 at lower and upper.
Thanks to Jason Li for picking this up.
o summaryvgam() and summarypvgam() calls
summaryvglm(HDEtest = FALSE) to
simplify things and avoid unnecessary complications.
o expected.betabin.ab renamed to Ebbin.ab.
o Deprecated: gordlink(), pordlink(),
nbordlink(), nbord2link().
Files: