Path to this page:
Subject: CVS commit: pkgsrc/geography/R-stars
From: Makoto Fujiwara
Date: 2024-12-01 15:52:54
Message id: 20241201145254.56AA5FC1C@cvs.NetBSD.org
Log Message:
(..geography/R-stars) Updated 0.5.3 to -l.6.7
# version 0.6-7
* `st_extract()` fix if points coincide with boundary grid cell centers and \
bilinear interpolation is used; #720
* `st_extract()` if used with GDAL 3.10.0 uses InterpolateAtPoints, allowing for \
cubic and cubicspline interpolators (requiring sf >= 1.0-19).
* `Ops.stars()` (math ops) now also recycle arrays in the first argument; #718
* `c.stars()` verifies semantic equivalence of objects' CRS; #703
* initial support for `read_mdim()` to work with `proxy = TRUE`; #659
# version 0.6-6
* skip `cubble` tests for cubble version 0.3.1; \
https://github.com/huizezhang-sherry/cubble/issues/30
* `st_transform.stars` transforms geometries in array elements
* `mutate.stars` (and others) handle attribute names with spaces in them; #689
* `st_crop()` gains an argument `normalize`; when set to `TRUE` `st_normalize()` \
is called on the returned value; #685, #686
* constrain reading full GEOLOCATION arrays to the case where they are 2-D; #678
# version 0.6-5
* fix `st_as_stars.Spatial()` for `Spatial` gridded objects with non-square grid \
cells, see https://github.com/r-spatial/gstat/issues/123
* add `prcomp()` methods for `stars` and `stars_proxy` objects, working on \
attributes or last dimension
* `st_rasterize()` with `align=TRUE` returns `NA` values where there are no \
data; #668
* `read_mdim()` reads tables with composity type, returning a `data.frame` in \
that case; #659
* `st_rotate()` transforms a rotated grid back to a curvilinear grid in \
unrotated coordinates.
* `aggregate.stars()` deals with functions that return more than one number, \
putting these in a new dimension like `st_apply()` does
* `st_as_stars.data.frame()` and `st_as_stars.sf()` better handle non-raster \
data cubes
* `plot.stars()` only resets layout when needed (more than one sub-plot, or key \
present)
* fixed `st_as_stars.im()`; #648
* `st_crs<-.stars()` is less critical on existing CRS being of class `crs`
* `c.stars()` with a single (valid) argument and `along` specified adds a \
dimension; #646
* `st_join.stars()` keeps attributes from `x` complete; #643
* `st_as_stars.list()` requires a _named_ list, and will set names of array \
dimensions if not present
# version 0.6-4
* `plot.stars()` has a `fill` argument that shifts unused plotting space between \
sub-maps to the bottom or right side of the plotting area
* in `plot.stars()`, the `key.width` default is sensitive to \
`par("ps")`, the pointsize graphics parameter
* `plot.stars()` and `image.stars()` are sensitive to `cex.axis`, for axes and \
key (requires sf >= 1.0-14); #642
* move `lwgeom` dependency to Suggests; using `st_transform_proj()` on vector \
data cubes requires loading `lwgeom` first
# version 0.6-3
* `st_downsample()` has argument `offset` to pixel-shift downsampled images
* `st_downsample()` has argument `FUN` to compute sub-tile aggregates; #604
* `st_as_stars.bbox()` retains `factor` values; #640
* fix CRAN error in test script
* `st_crop()` works (and warns) for the case when the crop area does not overlap \
with the area of the object; #638
# version 0.6-2
* `split.stars()` accepts `stars` objects with multiple attributes; #635
* `[.stars()` supports `NA` values in dimension ranges for vector geometry \
(`sfc`) dimensions, resulting in empty geometries
* `st_extract()` supports extracting points values from curvilinear grids (when \
not proxy); #632
* `read_mdim()` reads curvilinear rasters (geolocation arrays), so far only at \
full extent/resolution
* `st_as_stars.stars()` accepts curvilinear argument with lon/lat array names \
present in `.x`
* consistently use `OGC:CRS84` instead of `EPSG:4326`
* setting `values = NULL` in `st_set_dimensions()` removes dimension values
* more gracefully handle plotting of global coverage curvilinear grids; #632
* `image.stars()` plots images (e.g. of cross sections) when x and/or y are \
singular or absent; #628
* `st_as_stars.cubble_df()` adds conversion from cubble; `cubble::as_cubble()` \
methods converts back
* `[<-.stars()` accepts for `i` an indicator (numeric length character) to \
the array to be replaced; #626
* `plot.stars()` gains an argument `key.lab` to set the legend key label \
(requires sf >= 1.0-13)
# version 0.6-1
* remove `rgdal` dependency
* `read_stars()` fixes combining bands with different block sizes; #623
* `st_warp()` gets (proper) default value for `threshold`; #618
* `read_mdim()` reads "raster" with single pixel (as a point)
* `[.stars()`, as in `r[x]` allows `x` to be a logical stars object
* `[<-.stars_proxy()` clones environment, so that after `r[r > 100] = NA` \
we don't get infinite recursion when realizing `r`
* `read_stars()` avoids reading a raster twice to determine how to choose \
`proxy`; `proxy` can now be set as (and defaults to) the number of cells (bands \
* rows * columns) above which data will not be read in memory but returned as \
`stars_proxy` object; #609
* fix using `RasterIO` in `read_stars()` when `proxy=TRUE`; #608
* `plot.stars()` hook function can handle arguments `row`, `col`, `nrow`, \
`ncol`, `nr`, `value` and `bbox`; #600
* fix handling of categorical rasters with colors but without category labels; \
#595, fallout of #565
* fix subsetting of proxy objects over a time range; #596
# version 0.6-0
* `write_stars()` writes scaled and/or shifted values when using argument \
`scale_offset`; #589
* `aggregate.stars_proxy()` implements aggregation with non-spatial `by` objects \
(lazily)
* fix `[.stars_proxy()` when selecting dimension 3 and higher; #561
* in `plot.stars()`, `col` can also be a palette function
* `st_res()` returns spatial resolutions, and optionally all dimension \
resolutions; #557 thanks to Krzysztof Dyba
* `read_stars()` shortens band or array names that contain a common start or \
ending, unless names would become empty or `shorten=FALSE` was set; e.g. \
`shorten="B"` puts a `B` before shortened array names
* printing `stars` dimension tables omits fields with only `NULL` or `NA` \
values, unless `print(..., all = TRUE)` is given
* improve reading categorical rasters, which now avoids calling `factor()`; #565 \
thanks to Krzysztof Dyba
* `read_mdim()` will read bounds arrays for coordinates using the `bounds` \
attribute, and accepts a `bounds` argument to specify them when that attribute \
is missing
* `time()` returns time stamps of a time dimension
* `st_cells()` returns the cell index for a set of point coordinates, provided \
as `sf` or `sfc` object; #558
* reading & writing vector data cubes: `read_mdim()` reads CF compliant \
vector geometries, and reconstructs them into an `sfc` dimension; `write_mdim()` \
writes them.
* `write_mdim()` uses GDAL multidimensional array API;
* `read_mdim()` uses arguments `offset`, `count` and `step` to read sub-arrays \
or strided arrays (requires sf >= 1.0-9)
# version 0.5-6
* export `read_mdim()`, a reader using GDAL's multidimensional array API (for sf \
<= 1.0-8)
* remove `tos_O1_2001-2002.nc` from packaged datasets to keep source package \
size below 5 Mb
* `as.POSIXct.stars()` converts `PCICt` dimensions to `POSIXct` values.
* improve handling of `PCICt` 360 or 365 day calendars; read them in `read_mdim` \
(requires sf >= 1.0-9)
* `read_stars()` reads factor levels better from attribute table; #484 thanks to \
@ailich
* `read_stars()` puts band names from `band_meta` DESCRIPTION= tags into `values`;
* improve handling of categorical rasters, and their exchange with `terra`; #484
* `plot()` handles auto colors better for factor arrays
* `read_ncdf()` handles units more formally in setting crs; #533
* print message that dimensions of proxy objects do not reflect unevaluated \
operations; #530
* passing `na.action = na.omit` to `geom_stars()` removes `NA` values; #532
* `read_stars()` detects curvilinear grids automatically; #513
* `st_warp()` warps curvilinear grids (using Euclidean distances only on \
coordinates); #513
* `Ops.stars()` errors when (common) dimension are not identical; #506
* `guess_raster()` accepts empty rows/columns and sparse grids; #509
* speed up `rgb` plotting; #503
* Added a new helper function `st_tile()` to specify the block
parameters (`nXOff`, `nYOff`, `nXsize`, `nYSize`) required by `RasterIO`
argument in `read_stars()`; #492 thanks to Krzysztof Dyba
# version 0.5-5
* `st_as_stars.bbox()` creates an empy raster file if `proxy = TRUE`; #489
* `st_rasterize()` has option `align = TRUE` to use a template for aligning the \
new raster to; #489
* `adrop.stars()` with missing dimensions no longer drops x/y raster dimensions; #485
* `aggregate.stars()` propagates units of arrays; #477
# version 0.5-4
* `c.stars()` fails if it tries to merge arrays with different units; #475
* For NetCDF files, `read_stars()` uses the `long_name` as array name; #475
* add `rename()` method; #470
* refresh CRS of packaged `L7_ETMs.tif`; #466
* `as.data.frame.stars()` works for mixed regular and rectilinear dimension; #458
* `plot.stars()` plots curvilinear rasters with color table, or without table \
but `col` argument passed; #456
* `st_extract()` accepts a matrix with points as `at` argument, for when \
performance is important; see e.g. https://github.com/rspatial/terra/issues/341
* fix bug in `st_crop()` when cropping area is larger than grid; #455
* export `st_downsample()`, e.g. to be used by `tmap`; \
https://github.com/r-tmap/tmap/issues/597
* argument `downsample` in `plot.stars()` and `st_as_stars.stars_proxy()` and \
`st_downsample()` has the same effect (removed a one-offset between them).
* `st_redimension()` works for curvilinear grids; #441
* `downsample` is propagated to subexpressions like `r[r < 50] = NA`
* `predict.stars()` obtains an argument `drop_dimensions` that, if `TRUE`, drops \
dimensions from the prediction `data.frame`; #362
* extend options in `st_rgb()`, #432, by Gabo Gaona
* allow subsetting with `[` by using labels, e.g. of band names.
Files: