./biology/fastq-trim, Lightening fast sequence read trimmer

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Branch: CURRENT, Version: 0.1.3, Package name: fastq-trim-0.1.3, Maintainer: bacon

Fastq-trim is a lightening fast read trimming tool for QA of DNA
and RNA reads prior to analyses such as RNA-Seq. it runs in a
fraction of the time required by popular trimmers and uses only a
few megabytes of RAM, so it will run almost entirely in cache.
The design supports adding any number of alignment functions, so
it can be easily adapted to any trimming needs.

Master sites:

Filesize: 29.879 KB

Version history: (Expand)

CVS history: (Expand)


   2023-12-24 11:18:28 by Niclas Rosenvik | Files touched by this commit (1) 
Log message:
fastq-trim: fix installation when using custom PKGMANDIR
   2023-10-28 22:35:44 by Jason Bacon | Files touched by this commit (4) | Package updated
Log message:
biology/fastq-trim: Update to 0.1.3

fastq-scum: Add zstd and lz4 support
Add low_qual_base_count update for paired end reads
Clean up and expand final output format
A few other minor improvements
Updates for latest libxtend API
Improvements to test script

Changes: https://github.com/auerlab/fastq-trim/releases
   2022-12-28 16:27:18 by Jason Bacon | Files touched by this commit (20) 
Log message:
Change MAINTAINER= to OWNER= on mission-critical packages
   2022-12-11 22:25:48 by Jason Bacon | Files touched by this commit (3) 
Log message:
biology/fastq-trim: Update to 0.1.2

Minor enhancements, fixes for SunOS

Changes:    https://github.com/auerlab/fastq-trim/releases
   2022-11-06 23:49:37 by Jason Bacon | Files touched by this commit (4) 
Log message:
biology/fastq-trim: Lightening fast sequence read trimmer

Fastq-trim is a lightening fast read trimming tool for QA of DNA and RNA reads
prior to analyses such as RNA-Seq.  it runs in a fraction of the time required
by popular trimmers and uses only a few megabytes of RAM, so it will run
almost entirely in cache.  The design supports adding any number of alignment
functions, so it can be easily adapted to any trimming needs.