2021-12-30 14:05:42 by Adam Ciarcinski | Files touched by this commit (125) |
Log message:
Forget about Python 3.6
|
2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73) |
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
|
2021-10-07 15:19:44 by Nia Alarie | Files touched by this commit (73) |
Log message:
biology: Remove SHA1 hashes for distfiles
|
2021-04-22 10:36:59 by Nia Alarie | Files touched by this commit (1) |
Log message:
py-cutadpt: add missing build dependency
|
2021-03-31 11:23:56 by Adam Ciarcinski | Files touched by this commit (2) | |
Log message:
py-cutadapt: updated to 3.4
v3.4 (2021-03-30)
-----------------
* :issue:`481`: An experimental single-file Windows executable of Cutadapt
is `available for download on the GitHub "releases"
page <https://github.com/marcelm/cutadapt/releases>`_.
* :issue:`517`: Report correct sequence in info file if read was reverse complemented
* :issue:`517`: Added a column to the info file that shows whether the read was
reverse-complemented (if ``--revcomp`` was used)
* :issue:`320`: Fix (again) "Too many open files" when demultiplexing
|
2021-03-08 08:10:56 by Adam Ciarcinski | Files touched by this commit (2) | |
Log message:
py-cutadapt: updated to 3.3
v3.3:
* :issue:`504`: Fix a crash on Windows.
* :issue:`490`: When ``--rename`` is used with ``--revcomp``, disable adding the
``rc`` suffix to reads that were reverse-complemented.
* Also, there is now a ``{rc}` template variable for the ``--rename`` option, which
is replaced with "rc" if the read was reverse-complemented (and the \
empty string if not).
* :issue:`512`: Fix issue :issue:`128` once more (the “Reads written” figure \
in the report
incorrectly included both trimmed and untrimmed reads if \
``--untrimmed-output`` was used).
* :issue:`515`: The report is now send to stderr if any output file is
written to stdout
|
2021-02-11 11:30:56 by Adam Ciarcinski | Files touched by this commit (3) |
Log message:
py-cutadapt: fix CATEGORY, mark as not for 2.7 and 3.6, use ALTERNATIVES
|
2021-02-08 02:55:23 by Jason Bacon | Files touched by this commit (4) |
Log message:
biology/py-cutadapt: import py38-cutadapt-3.2
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other
types of unwanted sequence from your high-throughput sequencing reads.
|