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Subject: CVS commit: pkgsrc/math/R-lme4
From: Wen Heping
Date: 2018-12-21 13:53:49
Message id: 20181221125349.E0A92FB16@cvs.NetBSD.org
Log Message:
Update to 1.1.19
Upstream changes:
CHANGES IN VERSION 1.1-19
NEW FEATURES
influence measure code from car rolled in (see ?influence.merMod)
mkReTrm gets new arguments reorder.terms, reorder.vars to control \
arrangement of RE terms and individual effects with RE terms within model \
structures
adding material from the RePsychLing package (on GitHub; see Bates et al \
2015 arXiv:1506.04967) to show orthogonal variance components.
USER-VISIBLE CHANGES
as.data.frame.merMod finds conditional variance information stored either as \
attr(.,"postVar") or attr(.,"condVar") (for glmmTMB \
compatibility)
change to defaults of [g]lmerControl to print a message when fits are singular
new utility isSingular() function for detecting singular fits; by default a \
message is printed for singular fits
allFit function/methods have been moved to the main package, rather than \
being included in an auxiliary source file
post-fitting convergence checks based on estimated gradient and Hessian (see \
troubleshooting) are no longer performed for (nearly-)singular fits (see \
isSingular)
CHANGES IN VERSION 1.1-18-1 (2018-08-17)
This is a minor release; the only change is to roll back (unexport) the \
influence.merMod method, pending resolution of conflicts with the car package
CHANGES IN VERSION 1.1-18 ((2018-08-16)
USER-VISIBLE CHANGES
ranef(.,condVar=TRUE) now works when there are multiple random effects terms \
per factor
NEW FEATURES
rstudent and influence methods are available for merMod objects
devfun2 function (for generating a deviance function that works on the \
standard deviation/correlation scale) is now exported
BUG FIXES
lmList now obeys its pool argument (instead of always using what currently \
is the default, GH #476)
CHANGES IN VERSION 1.1-17 (2018-04-03)
This is a maintenance release only (fixes CRAN problems with cross-platform \
tests and examples)
CHANGES IN VERSION 1.1-16 (2018-03-28)
BUG FIXES
lmList no longer ignores the subset argument (John Fox)
fixed several minor issues with predicting when (1) grouping variables have \
different levels from original model (e.g. missing levels/factor levels not \
explicitly specified in newdata) or (2) re.form is a subset of the original RE \
formula and some (unused) grouping variables are omitted from newdata (GH #452, \
#457)
USER-VISIBLE CHANGES
lmList tries harder to collect errors and pass them on as warnings
documented as.function method (given a merMod object, returns a function \
that computes the deviance/REML criterion for specified parameters)
print method for summary.merMod objects no longer collapses small values of \
the t-statistic to zero
Files: