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Subject: CVS commit: pkgsrc/biology/htslib
From: Adam Ciarcinski
Date: 2022-07-05 13:00:16
Message id: 20220705110016.31C2FFB1A@cvs.NetBSD.org
Log Message:
htslib: updated to 1.15.1
1.15.1
Security fix: Fixed broken error reporting in the sam_cap_mapq() function, due \
to a missing hts_log() parameter. Prior to this fix it was possible to abuse the \
log message format string by passing a specially crafted alignment record to \
this function.
HTSlib now uses libhtscodecs release 1.2.2. This fixes a number of bugs where \
invalid compressed data could trigger usage of uninitialised values.
Fixed excessive memory used by multi-threaded SAM output on long reads.
Fixed a bug where tabix would misinterpret region specifiers starting at \
position 0. It will also now warn if the file being indexed is supposed to be \
1-based but has positions less than or equal to 0.
The VCF header parser will now issue a warning if it finds an INFO header with \
Type=Flag but Number not equal to 0. It will also ignore the incorrect Number so \
the flag can be used.
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