./biology/bwa, Map low-divergent sequences against a large reference genome

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Branch: CURRENT, Version: 0.7.17nb2, Package name: bwa-0.7.17nb2, Maintainer: bacon

BWA is a software package for mapping low-divergent sequences against a large
reference genome, such as the human genome.


Required to run:
[lang/perl5]

Required to build:
[pkgtools/cwrappers]

Master sites:

SHA1: 77f9aac723110227ea51cb42011336d291d03723
RMD160: d26a266387dee4fc9fcf6eef4f7ffcc076495c22
Filesize: 227.142 KB

Version history: (Expand)


CVS history: (Expand)


   2018-08-22 11:48:07 by Thomas Klausner | Files touched by this commit (3558)
Log message:
Recursive bump for perl5-5.28.0
   2017-12-28 00:44:02 by Havard Eidnes | Files touched by this commit (3) | Package updated
Log message:
Re-add patch to bring timeval definition and select prototype into scope.
Bump PKGREVISION.
   2017-12-17 15:30:36 by Jason Bacon | Files touched by this commit (4) | Package updated
Log message:
biology/bwa: Update to 0.7.17

Numerous bug fixes, enhancements, and new command-line options

ok wiz@
   2017-02-14 22:34:34 by Joerg Sonnenberger | Files touched by this commit (2)
Log message:
Add missing include.
   2016-07-09 08:39:18 by Thomas Klausner | Files touched by this commit (1068) | Package updated
Log message:
Bump PKGREVISION for perl-5.24.0 for everything mentioning perl.
   2015-12-12 17:56:04 by Sebastian Wiedenroth | Files touched by this commit (3)
Log message:
Fix int types and network libs on SunOS
   2015-11-07 21:20:55 by David A. Holland | Files touched by this commit (1)
Log message:
Unconditionally uses <emmintrin.h>, so restrict to x86.
   2015-11-02 19:42:23 by Alistair G. Crooks | Files touched by this commit (38)
Log message:
Add SHA512 digests for distfiles for biology category.

Existing SHA1 digests verified, all found to be the same on the
machine holding the existing distfiles (morden).  Existing SHA1
digests retained for now as an audit trail.